Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.44■■□□□ 1.02
TRIM38O00635 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC21.44■■□□□ 1.02
TRIM38O00635 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
TRIM38O00635 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRIM38O00635 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
TRIM38O00635 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM38O00635 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM38O00635 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM38O00635 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.43■■□□□ 1.02
TRIM38O00635 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM38O00635 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
TRIM38O00635 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.43■■□□□ 1.02
TRIM38O00635 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.43■■□□□ 1.02
TRIM38O00635 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.43■■□□□ 1.02
TRIM38O00635 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM38O00635 AL137060.1-201ENST00000618151 2648 ntBASIC21.43■■□□□ 1.02
TRIM38O00635 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.43■■□□□ 1.02
TRIM38O00635 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM38O00635 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
TRIM38O00635 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.43■■□□□ 1.02
TRIM38O00635 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM38O00635 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM38O00635 PKD1P6-201ENST00000343738 4769 ntBASIC21.42■■□□□ 1.02
TRIM38O00635 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM38O00635 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.42■■□□□ 1.02
TRIM38O00635 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.42■■□□□ 1.02
TRIM38O00635 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.42■■□□□ 1.02
TRIM38O00635 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.42■■□□□ 1.02
TRIM38O00635 HLA-L-209ENST00000420110 1011 ntBASIC21.42■■□□□ 1.02
TRIM38O00635 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM38O00635 AP004607.4-201ENST00000530158 1459 ntBASIC21.42■■□□□ 1.02
TRIM38O00635 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.42■■□□□ 1.02
TRIM38O00635 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.42■■□□□ 1.02
TRIM38O00635 AC137761.2-201ENST00000561729 223 ntBASIC21.42■■□□□ 1.02
TRIM38O00635 AC145350.3-201ENST00000569033 163 ntBASIC21.42■■□□□ 1.02
TRIM38O00635 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
TRIM38O00635 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM38O00635 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
TRIM38O00635 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.41■■□□□ 1.02
TRIM38O00635 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.41■■□□□ 1.02
TRIM38O00635 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM38O00635 AC004854.2-201ENST00000608450 1441 ntBASIC21.41■■□□□ 1.02
TRIM38O00635 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM38O00635 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
TRIM38O00635 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM38O00635 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM38O00635 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.41■■□□□ 1.02
TRIM38O00635 BX005040.4-201ENST00000637145 1518 ntBASIC21.4■■□□□ 1.02
TRIM38O00635 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM38O00635 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM38O00635 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.4■■□□□ 1.02
TRIM38O00635 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM38O00635 AC016769.1-201ENST00000409132 1010 ntBASIC21.4■■□□□ 1.02
TRIM38O00635 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM38O00635 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.4■■□□□ 1.02
TRIM38O00635 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM38O00635 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC21.4■■□□□ 1.02
TRIM38O00635 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM38O00635 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM38O00635 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.4■■□□□ 1.02
TRIM38O00635 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.39■■□□□ 1.02
TRIM38O00635 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
TRIM38O00635 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
TRIM38O00635 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
TRIM38O00635 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
TRIM38O00635 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
TRIM38O00635 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM38O00635 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.39■■□□□ 1.01
TRIM38O00635 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM38O00635 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM38O00635 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM38O00635 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.39■■□□□ 1.01
TRIM38O00635 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.39■■□□□ 1.01
TRIM38O00635 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.39■■□□□ 1.01
TRIM38O00635 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.39■■□□□ 1.01
TRIM38O00635 RAP2CP1-201ENST00000605103 478 ntBASIC21.39■■□□□ 1.01
TRIM38O00635 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
TRIM38O00635 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM38O00635 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM38O00635 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM38O00635 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM38O00635 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM38O00635 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM38O00635 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.38■■□□□ 1.01
TRIM38O00635 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TRIM38O00635 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRIM38O00635 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.38■■□□□ 1.01
TRIM38O00635 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.38■■□□□ 1.01
TRIM38O00635 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRIM38O00635 CDCA4P2-201ENST00000441182 718 ntBASIC21.38■■□□□ 1.01
TRIM38O00635 TK2-208ENST00000545043 1120 ntTSL 2 BASIC21.38■■□□□ 1.01
TRIM38O00635 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.38■■□□□ 1.01
TRIM38O00635 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRIM38O00635 AC092053.2-201ENST00000640557 1818 ntBASIC21.38■■□□□ 1.01
TRIM38O00635 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
TRIM38O00635 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.38■■□□□ 1.01
TRIM38O00635 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
TRIM38O00635 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
TRIM38O00635 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TRIM38O00635 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms