Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
PDLIM1O00151 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.23■□□□□ 0.83
PDLIM1O00151 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.23■□□□□ 0.83
PDLIM1O00151 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.23■□□□□ 0.83
PDLIM1O00151 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PDLIM1O00151 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PDLIM1O00151 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.23■□□□□ 0.83
PDLIM1O00151 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
PDLIM1O00151 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PDLIM1O00151 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.22■□□□□ 0.83
PDLIM1O00151 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
PDLIM1O00151 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PDLIM1O00151 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PDLIM1O00151 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PDLIM1O00151 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.22■□□□□ 0.83
PDLIM1O00151 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.22■□□□□ 0.83
PDLIM1O00151 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PDLIM1O00151 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PDLIM1O00151 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PDLIM1O00151 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.22■□□□□ 0.83
PDLIM1O00151 LETM1P2-201ENST00000597330 2178 ntBASIC20.22■□□□□ 0.83
PDLIM1O00151 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
PDLIM1O00151 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PDLIM1O00151 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM1O00151 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM1O00151 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM1O00151 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.21■□□□□ 0.83
PDLIM1O00151 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.21■□□□□ 0.83
PDLIM1O00151 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM1O00151 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM1O00151 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM1O00151 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM1O00151 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM1O00151 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.21■□□□□ 0.83
PDLIM1O00151 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.21■□□□□ 0.83
PDLIM1O00151 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
PDLIM1O00151 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM1O00151 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM1O00151 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM1O00151 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM1O00151 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.21■□□□□ 0.83
PDLIM1O00151 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM1O00151 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM1O00151 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
PDLIM1O00151 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM1O00151 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM1O00151 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM1O00151 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
PDLIM1O00151 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM1O00151 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM1O00151 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.2■□□□□ 0.82
PDLIM1O00151 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.2■□□□□ 0.82
PDLIM1O00151 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM1O00151 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM1O00151 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PDLIM1O00151 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PDLIM1O00151 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PDLIM1O00151 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PDLIM1O00151 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PDLIM1O00151 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PDLIM1O00151 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.19■□□□□ 0.82
PDLIM1O00151 MIR6724-1-201ENST00000616420 92 ntBASIC20.19■□□□□ 0.82
PDLIM1O00151 MIR6724-2-201ENST00000616483 92 ntBASIC20.19■□□□□ 0.82
PDLIM1O00151 MIR6724-4-201ENST00000617390 92 ntBASIC20.19■□□□□ 0.82
PDLIM1O00151 MIR6724-3-201ENST00000622482 92 ntBASIC20.19■□□□□ 0.82
PDLIM1O00151 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.19■□□□□ 0.82
PDLIM1O00151 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
PDLIM1O00151 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PDLIM1O00151 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PDLIM1O00151 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PDLIM1O00151 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
PDLIM1O00151 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
PDLIM1O00151 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
PDLIM1O00151 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
PDLIM1O00151 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PDLIM1O00151 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
PDLIM1O00151 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.18■□□□□ 0.82
PDLIM1O00151 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM1O00151 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
PDLIM1O00151 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
PDLIM1O00151 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM1O00151 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM1O00151 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM1O00151 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.18■□□□□ 0.82
PDLIM1O00151 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM1O00151 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM1O00151 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.18■□□□□ 0.82
PDLIM1O00151 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM1O00151 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.18■□□□□ 0.82
PDLIM1O00151 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
PDLIM1O00151 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.18■□□□□ 0.82
PDLIM1O00151 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM1O00151 LINC01529-204ENST00000636474 1715 ntBASIC20.18■□□□□ 0.82
PDLIM1O00151 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
PDLIM1O00151 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM1O00151 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
PDLIM1O00151 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM1O00151 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
PDLIM1O00151 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.17■□□□□ 0.82
PDLIM1O00151 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms