Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 OR7E47P-201ENST00000546390 1422 ntBASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 AP001330.3-201ENST00000520123 633 ntBASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 AC133561.4-201ENST00000566112 224 ntBASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 AC008764.7-201ENST00000593779 1081 ntBASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 MPST-208ENST00000628507 698 ntTSL 5 BASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DRB4X5D2U9 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DRB4X5D2U9 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DRB4X5D2U9 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DRB4X5D2U9 AL137060.1-201ENST00000618151 2648 ntBASIC16.05■□□□□ 0.16
HLA-DRB4X5D2U9 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
HLA-DRB4X5D2U9 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DRB4X5D2U9 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC16.05■□□□□ 0.16
HLA-DRB4X5D2U9 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DRB4X5D2U9 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
HLA-DRB4X5D2U9 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DRB4X5D2U9 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC16.05■□□□□ 0.16
HLA-DRB4X5D2U9 AC099791.1-201ENST00000416440 715 ntBASIC16.05■□□□□ 0.16
HLA-DRB4X5D2U9 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC16.05■□□□□ 0.16
HLA-DRB4X5D2U9 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC16.05■□□□□ 0.16
HLA-DRB4X5D2U9 AICDA-202ENST00000537228 667 ntTSL 5 BASIC16.05■□□□□ 0.16
HLA-DRB4X5D2U9 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DRB4X5D2U9 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DRB4X5D2U9 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
HLA-DRB4X5D2U9 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC16.05■□□□□ 0.16
HLA-DRB4X5D2U9 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DRB4X5D2U9 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DRB4X5D2U9 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DRB4X5D2U9 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DRB4X5D2U9 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DRB4X5D2U9 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DRB4X5D2U9 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
HLA-DRB4X5D2U9 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DRB4X5D2U9 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC16.04■□□□□ 0.16
HLA-DRB4X5D2U9 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
HLA-DRB4X5D2U9 IGHV3-19-201ENST00000521488 291 ntBASIC16.04■□□□□ 0.16
HLA-DRB4X5D2U9 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DRB4X5D2U9 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC16.04■□□□□ 0.16
HLA-DRB4X5D2U9 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC16.04■□□□□ 0.16
HLA-DRB4X5D2U9 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC16.04■□□□□ 0.16
HLA-DRB4X5D2U9 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC16.04■□□□□ 0.16
HLA-DRB4X5D2U9 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DRB4X5D2U9 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 MIR939-201ENST00000401314 82 ntBASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 AC091305.1-201ENST00000479476 895 ntBASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 AF213884.3-201ENST00000563833 479 ntBASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC16.03■□□□□ 0.16
HLA-DRB4X5D2U9 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DRB4X5D2U9 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DRB4X5D2U9 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
HLA-DRB4X5D2U9 RASA4CP-201ENST00000424092 1398 ntBASIC16.02■□□□□ 0.16
HLA-DRB4X5D2U9 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
HLA-DRB4X5D2U9 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC16.02■□□□□ 0.16
HLA-DRB4X5D2U9 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
HLA-DRB4X5D2U9 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DRB4X5D2U9 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
HLA-DRB4X5D2U9 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
HLA-DRB4X5D2U9 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
HLA-DRB4X5D2U9 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC16.02■□□□□ 0.16
HLA-DRB4X5D2U9 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
HLA-DRB4X5D2U9 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DRB4X5D2U9 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC16.02■□□□□ 0.16
HLA-DRB4X5D2U9 GRAMD4P2-201ENST00000423297 1097 ntBASIC16.02■□□□□ 0.16
HLA-DRB4X5D2U9 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC16.02■□□□□ 0.16
HLA-DRB4X5D2U9 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC16.02■□□□□ 0.16
HLA-DRB4X5D2U9 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
HLA-DRB4X5D2U9 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms