Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC24.6■■□□□ 1.53
PCDHA1Q9Y5I3 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC24.6■■□□□ 1.53
PCDHA1Q9Y5I3 AC004911.1-201ENST00000416316 871 ntBASIC24.6■■□□□ 1.53
PCDHA1Q9Y5I3 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC24.6■■□□□ 1.53
PCDHA1Q9Y5I3 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC24.6■■□□□ 1.53
PCDHA1Q9Y5I3 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
PCDHA1Q9Y5I3 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC24.6■■□□□ 1.53
PCDHA1Q9Y5I3 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PCDHA1Q9Y5I3 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC24.6■■□□□ 1.53
PCDHA1Q9Y5I3 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHA1Q9Y5I3 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHA1Q9Y5I3 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHA1Q9Y5I3 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHA1Q9Y5I3 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC24.59■■□□□ 1.53
PCDHA1Q9Y5I3 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHA1Q9Y5I3 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC24.59■■□□□ 1.53
PCDHA1Q9Y5I3 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHA1Q9Y5I3 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC24.59■■□□□ 1.53
PCDHA1Q9Y5I3 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC24.59■■□□□ 1.53
PCDHA1Q9Y5I3 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC24.59■■□□□ 1.53
PCDHA1Q9Y5I3 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC24.59■■□□□ 1.53
PCDHA1Q9Y5I3 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC24.59■■□□□ 1.53
PCDHA1Q9Y5I3 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC24.59■■□□□ 1.53
PCDHA1Q9Y5I3 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC24.59■■□□□ 1.53
PCDHA1Q9Y5I3 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC24.59■■□□□ 1.53
PCDHA1Q9Y5I3 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
PCDHA1Q9Y5I3 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC24.59■■□□□ 1.53
PCDHA1Q9Y5I3 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHA1Q9Y5I3 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
PCDHA1Q9Y5I3 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
PCDHA1Q9Y5I3 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
PCDHA1Q9Y5I3 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
PCDHA1Q9Y5I3 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
PCDHA1Q9Y5I3 AC006015.1-201ENST00000429970 570 ntBASIC24.58■■□□□ 1.53
PCDHA1Q9Y5I3 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC24.58■■□□□ 1.53
PCDHA1Q9Y5I3 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
PCDHA1Q9Y5I3 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
PCDHA1Q9Y5I3 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC24.57■■□□□ 1.52
PCDHA1Q9Y5I3 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
PCDHA1Q9Y5I3 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC24.57■■□□□ 1.52
PCDHA1Q9Y5I3 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
PCDHA1Q9Y5I3 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC24.57■■□□□ 1.52
PCDHA1Q9Y5I3 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
PCDHA1Q9Y5I3 AC016769.1-201ENST00000409132 1010 ntBASIC24.57■■□□□ 1.52
PCDHA1Q9Y5I3 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC24.57■■□□□ 1.52
PCDHA1Q9Y5I3 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
PCDHA1Q9Y5I3 AC233723.2-201ENST00000623798 2106 ntBASIC24.57■■□□□ 1.52
PCDHA1Q9Y5I3 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC24.57■■□□□ 1.52
PCDHA1Q9Y5I3 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
PCDHA1Q9Y5I3 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC24.57■■□□□ 1.52
PCDHA1Q9Y5I3 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC24.57■■□□□ 1.52
PCDHA1Q9Y5I3 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC24.57■■□□□ 1.52
PCDHA1Q9Y5I3 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PCDHA1Q9Y5I3 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
PCDHA1Q9Y5I3 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC24.56■■□□□ 1.52
PCDHA1Q9Y5I3 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PCDHA1Q9Y5I3 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
PCDHA1Q9Y5I3 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PCDHA1Q9Y5I3 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PCDHA1Q9Y5I3 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
PCDHA1Q9Y5I3 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PCDHA1Q9Y5I3 HSCB-202ENST00000398941 955 ntTSL 2 BASIC24.56■■□□□ 1.52
PCDHA1Q9Y5I3 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC24.56■■□□□ 1.52
PCDHA1Q9Y5I3 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PCDHA1Q9Y5I3 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC24.56■■□□□ 1.52
PCDHA1Q9Y5I3 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC24.55■■□□□ 1.52
PCDHA1Q9Y5I3 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC24.55■■□□□ 1.52
PCDHA1Q9Y5I3 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
PCDHA1Q9Y5I3 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
PCDHA1Q9Y5I3 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
PCDHA1Q9Y5I3 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
PCDHA1Q9Y5I3 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
PCDHA1Q9Y5I3 SERP1-208ENST00000491660 830 ntTSL 2 BASIC24.55■■□□□ 1.52
PCDHA1Q9Y5I3 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC24.55■■□□□ 1.52
PCDHA1Q9Y5I3 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC24.55■■□□□ 1.52
PCDHA1Q9Y5I3 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC24.55■■□□□ 1.52
PCDHA1Q9Y5I3 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
PCDHA1Q9Y5I3 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
PCDHA1Q9Y5I3 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
PCDHA1Q9Y5I3 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
PCDHA1Q9Y5I3 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
PCDHA1Q9Y5I3 DLX3-202ENST00000512495 834 ntTSL 2 BASIC24.54■■□□□ 1.52
PCDHA1Q9Y5I3 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
PCDHA1Q9Y5I3 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC24.54■■□□□ 1.52
PCDHA1Q9Y5I3 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC24.54■■□□□ 1.52
PCDHA1Q9Y5I3 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
PCDHA1Q9Y5I3 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
PCDHA1Q9Y5I3 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PCDHA1Q9Y5I3 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PCDHA1Q9Y5I3 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC24.53■■□□□ 1.52
PCDHA1Q9Y5I3 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC24.53■■□□□ 1.52
PCDHA1Q9Y5I3 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC24.53■■□□□ 1.52
PCDHA1Q9Y5I3 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
PCDHA1Q9Y5I3 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC24.53■■□□□ 1.52
PCDHA1Q9Y5I3 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
PCDHA1Q9Y5I3 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC24.53■■□□□ 1.52
PCDHA1Q9Y5I3 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PCDHA1Q9Y5I3 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PCDHA1Q9Y5I3 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC24.53■■□□□ 1.52
PCDHA1Q9Y5I3 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC24.53■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms