Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS4AQ9UN37 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
VPS4AQ9UN37 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS4AQ9UN37 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS4AQ9UN37 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS4AQ9UN37 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
VPS4AQ9UN37 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS4AQ9UN37 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS4AQ9UN37 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS4AQ9UN37 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS4AQ9UN37 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS4AQ9UN37 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS4AQ9UN37 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS4AQ9UN37 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS4AQ9UN37 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
VPS4AQ9UN37 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS4AQ9UN37 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
VPS4AQ9UN37 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS4AQ9UN37 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.6■□□□□ 0.89
VPS4AQ9UN37 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS4AQ9UN37 AL499627.2-201ENST00000606283 725 ntBASIC20.6■□□□□ 0.89
VPS4AQ9UN37 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS4AQ9UN37 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.6■□□□□ 0.89
VPS4AQ9UN37 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS4AQ9UN37 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS4AQ9UN37 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
VPS4AQ9UN37 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS4AQ9UN37 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS4AQ9UN37 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS4AQ9UN37 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS4AQ9UN37 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
VPS4AQ9UN37 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS4AQ9UN37 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.59■□□□□ 0.89
VPS4AQ9UN37 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS4AQ9UN37 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.59■□□□□ 0.89
VPS4AQ9UN37 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS4AQ9UN37 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS4AQ9UN37 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS4AQ9UN37 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.59■□□□□ 0.89
VPS4AQ9UN37 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.59■□□□□ 0.89
VPS4AQ9UN37 AC092437.1-201ENST00000624794 1048 ntBASIC20.59■□□□□ 0.89
VPS4AQ9UN37 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.59■□□□□ 0.89
VPS4AQ9UN37 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS4AQ9UN37 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.59■□□□□ 0.89
VPS4AQ9UN37 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS4AQ9UN37 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS4AQ9UN37 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS4AQ9UN37 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.58■□□□□ 0.89
VPS4AQ9UN37 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
VPS4AQ9UN37 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS4AQ9UN37 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VPS4AQ9UN37 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
VPS4AQ9UN37 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VPS4AQ9UN37 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.58■□□□□ 0.89
VPS4AQ9UN37 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS4AQ9UN37 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.58■□□□□ 0.88
VPS4AQ9UN37 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.58■□□□□ 0.88
VPS4AQ9UN37 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.58■□□□□ 0.88
VPS4AQ9UN37 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS4AQ9UN37 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.58■□□□□ 0.88
VPS4AQ9UN37 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.58■□□□□ 0.88
VPS4AQ9UN37 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS4AQ9UN37 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS4AQ9UN37 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.57■□□□□ 0.88
VPS4AQ9UN37 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS4AQ9UN37 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.57■□□□□ 0.88
VPS4AQ9UN37 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS4AQ9UN37 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
VPS4AQ9UN37 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
VPS4AQ9UN37 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS4AQ9UN37 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS4AQ9UN37 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS4AQ9UN37 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 DUX4L2-201ENST00000561772 1275 ntBASIC20.56■□□□□ 0.88
VPS4AQ9UN37 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 DUX4L6-201ENST00000626483 1275 ntBASIC20.56■□□□□ 0.88
VPS4AQ9UN37 DUX4L1-201ENST00000627662 1275 ntBASIC20.56■□□□□ 0.88
VPS4AQ9UN37 DUX4L8-201ENST00000629013 1275 ntBASIC20.56■□□□□ 0.88
VPS4AQ9UN37 DUX4L3-201ENST00000630187 1275 ntBASIC20.56■□□□□ 0.88
VPS4AQ9UN37 DUX4L7-201ENST00000630678 1275 ntBASIC20.56■□□□□ 0.88
VPS4AQ9UN37 DUX4L5-201ENST00000630834 1275 ntBASIC20.56■□□□□ 0.88
VPS4AQ9UN37 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.56■□□□□ 0.88
VPS4AQ9UN37 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms