Protein–RNA interactions for Protein: Q96PE6

ZIM3, Zinc finger imprinted 3, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIM3Q96PE6 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ZIM3Q96PE6 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ZIM3Q96PE6 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
ZIM3Q96PE6 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ZIM3Q96PE6 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ZIM3Q96PE6 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ZIM3Q96PE6 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.88■■□□□ 1.09
ZIM3Q96PE6 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.88■■□□□ 1.09
ZIM3Q96PE6 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC21.88■■□□□ 1.09
ZIM3Q96PE6 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.88■■□□□ 1.09
ZIM3Q96PE6 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.88■■□□□ 1.09
ZIM3Q96PE6 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.88■■□□□ 1.09
ZIM3Q96PE6 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ZIM3Q96PE6 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
ZIM3Q96PE6 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ZIM3Q96PE6 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.87■■□□□ 1.09
ZIM3Q96PE6 C17orf82-201ENST00000623772 1530 ntBASIC21.87■■□□□ 1.09
ZIM3Q96PE6 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.87■■□□□ 1.09
ZIM3Q96PE6 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
ZIM3Q96PE6 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ZIM3Q96PE6 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
ZIM3Q96PE6 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ZIM3Q96PE6 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.87■■□□□ 1.09
ZIM3Q96PE6 AL049796.1-201ENST00000565336 1766 ntBASIC21.87■■□□□ 1.09
ZIM3Q96PE6 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ZIM3Q96PE6 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.86■■□□□ 1.09
ZIM3Q96PE6 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.86■■□□□ 1.09
ZIM3Q96PE6 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.86■■□□□ 1.09
ZIM3Q96PE6 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
ZIM3Q96PE6 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
ZIM3Q96PE6 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.86■■□□□ 1.09
ZIM3Q96PE6 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.86■■□□□ 1.09
ZIM3Q96PE6 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
ZIM3Q96PE6 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
ZIM3Q96PE6 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
ZIM3Q96PE6 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.86■■□□□ 1.09
ZIM3Q96PE6 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.86■■□□□ 1.09
ZIM3Q96PE6 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.86■■□□□ 1.09
ZIM3Q96PE6 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.86■■□□□ 1.09
ZIM3Q96PE6 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
ZIM3Q96PE6 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
ZIM3Q96PE6 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC21.86■■□□□ 1.09
ZIM3Q96PE6 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
ZIM3Q96PE6 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.86■■□□□ 1.09
ZIM3Q96PE6 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.85■■□□□ 1.09
ZIM3Q96PE6 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
ZIM3Q96PE6 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
ZIM3Q96PE6 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
ZIM3Q96PE6 KRT18P60-201ENST00000312876 1297 ntBASIC21.85■■□□□ 1.09
ZIM3Q96PE6 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.85■■□□□ 1.09
ZIM3Q96PE6 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
ZIM3Q96PE6 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.85■■□□□ 1.09
ZIM3Q96PE6 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
ZIM3Q96PE6 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.85■■□□□ 1.09
ZIM3Q96PE6 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
ZIM3Q96PE6 GABARAPL3-202ENST00000624044 1851 ntBASIC21.85■■□□□ 1.09
ZIM3Q96PE6 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
ZIM3Q96PE6 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
ZIM3Q96PE6 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.84■■□□□ 1.09
ZIM3Q96PE6 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.84■■□□□ 1.09
ZIM3Q96PE6 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.84■■□□□ 1.09
ZIM3Q96PE6 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZIM3Q96PE6 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
ZIM3Q96PE6 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZIM3Q96PE6 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
ZIM3Q96PE6 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.84■■□□□ 1.09
ZIM3Q96PE6 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.84■■□□□ 1.09
ZIM3Q96PE6 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZIM3Q96PE6 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.84■■□□□ 1.09
ZIM3Q96PE6 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.84■■□□□ 1.09
ZIM3Q96PE6 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
ZIM3Q96PE6 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
ZIM3Q96PE6 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
ZIM3Q96PE6 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
ZIM3Q96PE6 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
ZIM3Q96PE6 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
ZIM3Q96PE6 AFG3L1P-217ENST00000557444 2447 ntBASIC21.83■■□□□ 1.09
ZIM3Q96PE6 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC21.83■■□□□ 1.09
ZIM3Q96PE6 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.83■■□□□ 1.09
ZIM3Q96PE6 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
ZIM3Q96PE6 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
ZIM3Q96PE6 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
ZIM3Q96PE6 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
ZIM3Q96PE6 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
ZIM3Q96PE6 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.82■■□□□ 1.08
ZIM3Q96PE6 AP005212.1-201ENST00000581547 1997 ntBASIC21.82■■□□□ 1.08
ZIM3Q96PE6 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC21.82■■□□□ 1.08
ZIM3Q96PE6 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
ZIM3Q96PE6 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
ZIM3Q96PE6 HSD17B1P1-201ENST00000590052 955 ntBASIC21.82■■□□□ 1.08
ZIM3Q96PE6 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.82■■□□□ 1.08
ZIM3Q96PE6 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
ZIM3Q96PE6 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
ZIM3Q96PE6 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.82■■□□□ 1.08
ZIM3Q96PE6 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.81■■□□□ 1.08
ZIM3Q96PE6 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
ZIM3Q96PE6 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.81■■□□□ 1.08
ZIM3Q96PE6 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZIM3Q96PE6 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
ZIM3Q96PE6 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms