Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.52■□□□□ 0.87
VPS33AQ96AX1 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.51■□□□□ 0.87
VPS33AQ96AX1 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS33AQ96AX1 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS33AQ96AX1 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS33AQ96AX1 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS33AQ96AX1 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.51■□□□□ 0.87
VPS33AQ96AX1 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS33AQ96AX1 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS33AQ96AX1 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
VPS33AQ96AX1 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.51■□□□□ 0.87
VPS33AQ96AX1 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
VPS33AQ96AX1 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS33AQ96AX1 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS33AQ96AX1 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS33AQ96AX1 AC073130.3-201ENST00000624389 2278 ntBASIC20.51■□□□□ 0.87
VPS33AQ96AX1 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS33AQ96AX1 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS33AQ96AX1 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS33AQ96AX1 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VPS33AQ96AX1 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS33AQ96AX1 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
VPS33AQ96AX1 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.5■□□□□ 0.87
VPS33AQ96AX1 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS33AQ96AX1 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS33AQ96AX1 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VPS33AQ96AX1 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.5■□□□□ 0.87
VPS33AQ96AX1 UNC93B8-201ENST00000511903 705 ntBASIC20.5■□□□□ 0.87
VPS33AQ96AX1 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS33AQ96AX1 MIR6724-1-201ENST00000616420 92 ntBASIC20.5■□□□□ 0.87
VPS33AQ96AX1 MIR6724-2-201ENST00000616483 92 ntBASIC20.5■□□□□ 0.87
VPS33AQ96AX1 MIR6724-4-201ENST00000617390 92 ntBASIC20.5■□□□□ 0.87
VPS33AQ96AX1 MIR6724-3-201ENST00000622482 92 ntBASIC20.5■□□□□ 0.87
VPS33AQ96AX1 AC241377.3-202ENST00000626088 1088 ntBASIC20.5■□□□□ 0.87
VPS33AQ96AX1 AC241585.3-202ENST00000628937 1088 ntBASIC20.5■□□□□ 0.87
VPS33AQ96AX1 AC245100.8-202ENST00000629247 1058 ntBASIC20.5■□□□□ 0.87
VPS33AQ96AX1 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
VPS33AQ96AX1 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
VPS33AQ96AX1 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.5■□□□□ 0.87
VPS33AQ96AX1 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS33AQ96AX1 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS33AQ96AX1 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.5■□□□□ 0.87
VPS33AQ96AX1 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS33AQ96AX1 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VPS33AQ96AX1 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS33AQ96AX1 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.49■□□□□ 0.87
VPS33AQ96AX1 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
VPS33AQ96AX1 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.49■□□□□ 0.87
VPS33AQ96AX1 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.49■□□□□ 0.87
VPS33AQ96AX1 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.49■□□□□ 0.87
VPS33AQ96AX1 pRNA.6-201ENST00000610482 90 ntBASIC20.49■□□□□ 0.87
VPS33AQ96AX1 pRNA.5-201ENST00000612139 90 ntBASIC20.49■□□□□ 0.87
VPS33AQ96AX1 pRNA.11-201ENST00000618423 90 ntBASIC20.49■□□□□ 0.87
VPS33AQ96AX1 pRNA.13-201ENST00000619112 90 ntBASIC20.49■□□□□ 0.87
VPS33AQ96AX1 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
VPS33AQ96AX1 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS33AQ96AX1 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS33AQ96AX1 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS33AQ96AX1 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS33AQ96AX1 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.48■□□□□ 0.87
VPS33AQ96AX1 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
VPS33AQ96AX1 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS33AQ96AX1 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS33AQ96AX1 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS33AQ96AX1 OR7E47P-201ENST00000546390 1422 ntBASIC20.48■□□□□ 0.87
VPS33AQ96AX1 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS33AQ96AX1 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.48■□□□□ 0.87
VPS33AQ96AX1 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS33AQ96AX1 AL121603.2-201ENST00000557373 2117 ntBASIC20.48■□□□□ 0.87
VPS33AQ96AX1 AL157384.1-201ENST00000445995 2473 ntBASIC20.48■□□□□ 0.87
VPS33AQ96AX1 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS33AQ96AX1 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS33AQ96AX1 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS33AQ96AX1 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
VPS33AQ96AX1 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
VPS33AQ96AX1 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
VPS33AQ96AX1 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS33AQ96AX1 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS33AQ96AX1 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS33AQ96AX1 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS33AQ96AX1 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS33AQ96AX1 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS33AQ96AX1 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS33AQ96AX1 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS33AQ96AX1 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS33AQ96AX1 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS33AQ96AX1 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
VPS33AQ96AX1 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
VPS33AQ96AX1 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS33AQ96AX1 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS33AQ96AX1 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS33AQ96AX1 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.46■□□□□ 0.87
VPS33AQ96AX1 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS33AQ96AX1 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.46■□□□□ 0.87
VPS33AQ96AX1 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS33AQ96AX1 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.46■□□□□ 0.87
VPS33AQ96AX1 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VPS33AQ96AX1 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS33AQ96AX1 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS33AQ96AX1 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms