Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP4Q8N3C7 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.97■□□□□ 0.79
CLIP4Q8N3C7 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP4Q8N3C7 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC19.97■□□□□ 0.79
CLIP4Q8N3C7 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
CLIP4Q8N3C7 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP4Q8N3C7 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP4Q8N3C7 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.97■□□□□ 0.79
CLIP4Q8N3C7 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP4Q8N3C7 SERBP1P1-201ENST00000396021 1160 ntBASIC19.97■□□□□ 0.79
CLIP4Q8N3C7 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.97■□□□□ 0.79
CLIP4Q8N3C7 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP4Q8N3C7 AC131281.2-201ENST00000520478 145 ntBASIC19.97■□□□□ 0.79
CLIP4Q8N3C7 AC010525.1-201ENST00000585559 441 ntBASIC19.97■□□□□ 0.79
CLIP4Q8N3C7 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
CLIP4Q8N3C7 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.97■□□□□ 0.79
CLIP4Q8N3C7 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP4Q8N3C7 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLIP4Q8N3C7 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLIP4Q8N3C7 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.96■□□□□ 0.79
CLIP4Q8N3C7 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CLIP4Q8N3C7 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.96■□□□□ 0.79
CLIP4Q8N3C7 OR2I1P-207ENST00000453522 948 ntBASIC19.96■□□□□ 0.79
CLIP4Q8N3C7 AC079089.2-201ENST00000531211 1277 ntBASIC19.96■□□□□ 0.79
CLIP4Q8N3C7 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLIP4Q8N3C7 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC19.96■□□□□ 0.79
CLIP4Q8N3C7 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLIP4Q8N3C7 FAM99A-202ENST00000538190 1989 ntBASIC19.95■□□□□ 0.78
CLIP4Q8N3C7 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLIP4Q8N3C7 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.95■□□□□ 0.78
CLIP4Q8N3C7 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLIP4Q8N3C7 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLIP4Q8N3C7 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.95■□□□□ 0.78
CLIP4Q8N3C7 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLIP4Q8N3C7 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLIP4Q8N3C7 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CLIP4Q8N3C7 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.95■□□□□ 0.78
CLIP4Q8N3C7 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
CLIP4Q8N3C7 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.95■□□□□ 0.78
CLIP4Q8N3C7 SYT6-210ENST00000641643 1587 ntBASIC19.95■□□□□ 0.78
CLIP4Q8N3C7 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CLIP4Q8N3C7 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLIP4Q8N3C7 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLIP4Q8N3C7 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLIP4Q8N3C7 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.94■□□□□ 0.78
CLIP4Q8N3C7 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLIP4Q8N3C7 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLIP4Q8N3C7 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLIP4Q8N3C7 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLIP4Q8N3C7 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.94■□□□□ 0.78
CLIP4Q8N3C7 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CLIP4Q8N3C7 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
CLIP4Q8N3C7 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.94■□□□□ 0.78
CLIP4Q8N3C7 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.94■□□□□ 0.78
CLIP4Q8N3C7 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.94■□□□□ 0.78
CLIP4Q8N3C7 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
CLIP4Q8N3C7 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLIP4Q8N3C7 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CLIP4Q8N3C7 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CLIP4Q8N3C7 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.94■□□□□ 0.78
CLIP4Q8N3C7 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLIP4Q8N3C7 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.93■□□□□ 0.78
CLIP4Q8N3C7 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
CLIP4Q8N3C7 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLIP4Q8N3C7 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.93■□□□□ 0.78
CLIP4Q8N3C7 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.93■□□□□ 0.78
CLIP4Q8N3C7 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.93■□□□□ 0.78
CLIP4Q8N3C7 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.93■□□□□ 0.78
CLIP4Q8N3C7 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CLIP4Q8N3C7 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
CLIP4Q8N3C7 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CLIP4Q8N3C7 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLIP4Q8N3C7 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.93■□□□□ 0.78
CLIP4Q8N3C7 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLIP4Q8N3C7 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLIP4Q8N3C7 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CLIP4Q8N3C7 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CLIP4Q8N3C7 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.92■□□□□ 0.78
CLIP4Q8N3C7 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.92■□□□□ 0.78
CLIP4Q8N3C7 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.92■□□□□ 0.78
CLIP4Q8N3C7 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.92■□□□□ 0.78
CLIP4Q8N3C7 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CLIP4Q8N3C7 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC19.92■□□□□ 0.78
CLIP4Q8N3C7 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.92■□□□□ 0.78
CLIP4Q8N3C7 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLIP4Q8N3C7 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLIP4Q8N3C7 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.92■□□□□ 0.78
CLIP4Q8N3C7 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLIP4Q8N3C7 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CLIP4Q8N3C7 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.92■□□□□ 0.78
CLIP4Q8N3C7 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.91■□□□□ 0.78
CLIP4Q8N3C7 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms