Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SKA3Q8IX90 IRS3P-201ENST00000223076 1006 ntBASIC18.89■□□□□ 0.61
SKA3Q8IX90 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC18.89■□□□□ 0.61
SKA3Q8IX90 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC18.89■□□□□ 0.61
SKA3Q8IX90 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC18.89■□□□□ 0.61
SKA3Q8IX90 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.89■□□□□ 0.61
SKA3Q8IX90 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SKA3Q8IX90 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SKA3Q8IX90 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.89■□□□□ 0.61
SKA3Q8IX90 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
SKA3Q8IX90 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC18.89■□□□□ 0.61
SKA3Q8IX90 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC18.88■□□□□ 0.61
SKA3Q8IX90 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA3Q8IX90 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA3Q8IX90 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA3Q8IX90 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA3Q8IX90 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA3Q8IX90 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA3Q8IX90 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SKA3Q8IX90 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA3Q8IX90 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC18.88■□□□□ 0.61
SKA3Q8IX90 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC18.88■□□□□ 0.61
SKA3Q8IX90 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC18.88■□□□□ 0.61
SKA3Q8IX90 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SKA3Q8IX90 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SKA3Q8IX90 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SKA3Q8IX90 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA3Q8IX90 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC18.88■□□□□ 0.61
SKA3Q8IX90 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA3Q8IX90 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.88■□□□□ 0.61
SKA3Q8IX90 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC18.88■□□□□ 0.61
SKA3Q8IX90 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA3Q8IX90 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC18.88■□□□□ 0.61
SKA3Q8IX90 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SKA3Q8IX90 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.87■□□□□ 0.61
SKA3Q8IX90 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
SKA3Q8IX90 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SKA3Q8IX90 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SKA3Q8IX90 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC18.87■□□□□ 0.61
SKA3Q8IX90 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC18.87■□□□□ 0.61
SKA3Q8IX90 AP004607.7-201ENST00000527152 1677 ntBASIC18.87■□□□□ 0.61
SKA3Q8IX90 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SKA3Q8IX90 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SKA3Q8IX90 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC18.86■□□□□ 0.61
SKA3Q8IX90 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC18.86■□□□□ 0.61
SKA3Q8IX90 C11orf96-202ENST00000528572 1834 ntBASIC18.86■□□□□ 0.61
SKA3Q8IX90 ASL-203ENST00000380839 1765 ntTSL 5 BASIC18.86■□□□□ 0.61
SKA3Q8IX90 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SKA3Q8IX90 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SKA3Q8IX90 ZNRF2P3-201ENST00000424200 374 ntBASIC18.86■□□□□ 0.61
SKA3Q8IX90 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC18.86■□□□□ 0.61
SKA3Q8IX90 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SKA3Q8IX90 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
SKA3Q8IX90 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.86■□□□□ 0.61
SKA3Q8IX90 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SKA3Q8IX90 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
SKA3Q8IX90 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC18.86■□□□□ 0.61
SKA3Q8IX90 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
SKA3Q8IX90 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.85■□□□□ 0.61
SKA3Q8IX90 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SKA3Q8IX90 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SKA3Q8IX90 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SKA3Q8IX90 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SKA3Q8IX90 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SKA3Q8IX90 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC18.85■□□□□ 0.61
SKA3Q8IX90 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC18.85■□□□□ 0.61
SKA3Q8IX90 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC18.85■□□□□ 0.61
SKA3Q8IX90 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.85■□□□□ 0.61
SKA3Q8IX90 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC18.85■□□□□ 0.61
SKA3Q8IX90 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC18.85■□□□□ 0.61
SKA3Q8IX90 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC18.85■□□□□ 0.61
SKA3Q8IX90 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SKA3Q8IX90 MYB-221ENST00000527615 2381 ntTSL 5 BASIC18.85■□□□□ 0.61
SKA3Q8IX90 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SKA3Q8IX90 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SKA3Q8IX90 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA3Q8IX90 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA3Q8IX90 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC18.84■□□□□ 0.61
SKA3Q8IX90 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
SKA3Q8IX90 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA3Q8IX90 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC18.84■□□□□ 0.61
SKA3Q8IX90 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA3Q8IX90 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA3Q8IX90 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
SKA3Q8IX90 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SKA3Q8IX90 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SKA3Q8IX90 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.84■□□□□ 0.61
SKA3Q8IX90 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA3Q8IX90 AC012414.1-201ENST00000556676 535 ntBASIC18.84■□□□□ 0.61
SKA3Q8IX90 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC18.84■□□□□ 0.61
SKA3Q8IX90 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC18.84■□□□□ 0.61
SKA3Q8IX90 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA3Q8IX90 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA3Q8IX90 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SKA3Q8IX90 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SKA3Q8IX90 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA3Q8IX90 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC18.84■□□□□ 0.61
SKA3Q8IX90 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SKA3Q8IX90 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
SKA3Q8IX90 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms