Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00643Q86TS7 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC13.45□□□□□ -0.26
LINC00643Q86TS7 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00643Q86TS7 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC13.45□□□□□ -0.26
LINC00643Q86TS7 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00643Q86TS7 LTB4R2-202ENST00000528054 3092 ntBASIC13.45□□□□□ -0.26
LINC00643Q86TS7 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC13.45□□□□□ -0.26
LINC00643Q86TS7 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
LINC00643Q86TS7 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC13.45□□□□□ -0.26
LINC00643Q86TS7 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00643Q86TS7 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00643Q86TS7 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC13.44□□□□□ -0.26
LINC00643Q86TS7 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00643Q86TS7 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC13.44□□□□□ -0.26
LINC00643Q86TS7 AR-207ENST00000612010 3896 ntTSL 5 BASIC13.44□□□□□ -0.26
LINC00643Q86TS7 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00643Q86TS7 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00643Q86TS7 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00643Q86TS7 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00643Q86TS7 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC13.44□□□□□ -0.26
LINC00643Q86TS7 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00643Q86TS7 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00643Q86TS7 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00643Q86TS7 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00643Q86TS7 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00643Q86TS7 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00643Q86TS7 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00643Q86TS7 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
LINC00643Q86TS7 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 AL133380.1-201ENST00000506013 324 ntBASIC13.43□□□□□ -0.26
LINC00643Q86TS7 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 AC004408.2-201ENST00000623613 2777 ntBASIC13.43□□□□□ -0.26
LINC00643Q86TS7 TUB-203ENST00000534099 1759 ntTSL 2 BASIC13.43□□□□□ -0.26
LINC00643Q86TS7 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 LINC00273-201ENST00000539813 1452 ntBASIC13.42□□□□□ -0.26
LINC00643Q86TS7 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
LINC00643Q86TS7 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
LINC00643Q86TS7 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms