Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CX3CR1P49238 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CX3CR1P49238 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CX3CR1P49238 PTMA-205ENST00000410064 814 ntTSL 2 BASIC18.77■□□□□ 0.6
CX3CR1P49238 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CX3CR1P49238 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC18.77■□□□□ 0.6
CX3CR1P49238 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CX3CR1P49238 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CX3CR1P49238 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
CX3CR1P49238 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
CX3CR1P49238 AC244015.2-201ENST00000616358 1861 ntBASIC18.77■□□□□ 0.6
CX3CR1P49238 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
CX3CR1P49238 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.77■□□□□ 0.59
CX3CR1P49238 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CX3CR1P49238 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC18.76■□□□□ 0.59
CX3CR1P49238 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CX3CR1P49238 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CX3CR1P49238 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CX3CR1P49238 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CX3CR1P49238 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
CX3CR1P49238 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CX3CR1P49238 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CX3CR1P49238 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CX3CR1P49238 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CX3CR1P49238 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC18.76■□□□□ 0.59
CX3CR1P49238 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC18.76■□□□□ 0.59
CX3CR1P49238 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CX3CR1P49238 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CX3CR1P49238 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CX3CR1P49238 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CX3CR1P49238 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC18.76■□□□□ 0.59
CX3CR1P49238 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.76■□□□□ 0.59
CX3CR1P49238 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
CX3CR1P49238 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.75■□□□□ 0.59
CX3CR1P49238 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CX3CR1P49238 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC18.75■□□□□ 0.59
CX3CR1P49238 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CX3CR1P49238 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CX3CR1P49238 AP005435.1-201ENST00000529293 1178 ntBASIC18.75■□□□□ 0.59
CX3CR1P49238 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CX3CR1P49238 AL137060.1-201ENST00000618151 2648 ntBASIC18.75■□□□□ 0.59
CX3CR1P49238 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CX3CR1P49238 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC18.75■□□□□ 0.59
CX3CR1P49238 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CX3CR1P49238 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CX3CR1P49238 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.74■□□□□ 0.59
CX3CR1P49238 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CX3CR1P49238 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CX3CR1P49238 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CX3CR1P49238 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CX3CR1P49238 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18.74■□□□□ 0.59
CX3CR1P49238 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.74■□□□□ 0.59
CX3CR1P49238 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC18.74■□□□□ 0.59
CX3CR1P49238 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC18.74■□□□□ 0.59
CX3CR1P49238 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC18.74■□□□□ 0.59
CX3CR1P49238 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
CX3CR1P49238 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
CX3CR1P49238 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CX3CR1P49238 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CX3CR1P49238 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.74■□□□□ 0.59
CX3CR1P49238 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CX3CR1P49238 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC18.74■□□□□ 0.59
CX3CR1P49238 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC18.74■□□□□ 0.59
CX3CR1P49238 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
CX3CR1P49238 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CX3CR1P49238 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CX3CR1P49238 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
CX3CR1P49238 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC18.73■□□□□ 0.59
CX3CR1P49238 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CX3CR1P49238 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CX3CR1P49238 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CX3CR1P49238 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CX3CR1P49238 AC026471.6-201ENST00000622954 1905 ntBASIC18.73■□□□□ 0.59
CX3CR1P49238 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CX3CR1P49238 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
CX3CR1P49238 SNX3-202ENST00000349379 890 ntTSL 2 BASIC18.73■□□□□ 0.59
CX3CR1P49238 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CX3CR1P49238 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
CX3CR1P49238 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CX3CR1P49238 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CX3CR1P49238 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CX3CR1P49238 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CX3CR1P49238 AC026310.3-201ENST00000625186 2373 ntBASIC18.73■□□□□ 0.59
CX3CR1P49238 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CX3CR1P49238 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CX3CR1P49238 UNC93B3-201ENST00000308076 687 ntBASIC18.72■□□□□ 0.59
CX3CR1P49238 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CX3CR1P49238 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CX3CR1P49238 MIR4767-201ENST00000582827 78 ntBASIC18.72■□□□□ 0.59
CX3CR1P49238 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.72■□□□□ 0.59
CX3CR1P49238 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.72■□□□□ 0.59
CX3CR1P49238 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CX3CR1P49238 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CX3CR1P49238 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CX3CR1P49238 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CX3CR1P49238 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CX3CR1P49238 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
CX3CR1P49238 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CX3CR1P49238 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CX3CR1P49238 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms