Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 DUX4L1-201ENST00000627662 1275 ntBASIC20.88■□□□□ 0.93
CDH3P22223 DUX4L8-201ENST00000629013 1275 ntBASIC20.88■□□□□ 0.93
CDH3P22223 DUX4L3-201ENST00000630187 1275 ntBASIC20.88■□□□□ 0.93
CDH3P22223 DUX4L7-201ENST00000630678 1275 ntBASIC20.88■□□□□ 0.93
CDH3P22223 DUX4L5-201ENST00000630834 1275 ntBASIC20.88■□□□□ 0.93
CDH3P22223 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
CDH3P22223 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
CDH3P22223 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CDH3P22223 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
CDH3P22223 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDH3P22223 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDH3P22223 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDH3P22223 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDH3P22223 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CDH3P22223 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDH3P22223 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.87■□□□□ 0.93
CDH3P22223 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDH3P22223 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDH3P22223 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDH3P22223 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDH3P22223 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.86■□□□□ 0.93
CDH3P22223 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDH3P22223 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.86■□□□□ 0.93
CDH3P22223 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDH3P22223 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.86■□□□□ 0.93
CDH3P22223 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.86■□□□□ 0.93
CDH3P22223 TERF1P2-201ENST00000583350 1212 ntBASIC20.86■□□□□ 0.93
CDH3P22223 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.86■□□□□ 0.93
CDH3P22223 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.86■□□□□ 0.93
CDH3P22223 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDH3P22223 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CDH3P22223 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH3P22223 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CDH3P22223 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
CDH3P22223 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH3P22223 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
CDH3P22223 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH3P22223 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
CDH3P22223 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH3P22223 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.85■□□□□ 0.93
CDH3P22223 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
CDH3P22223 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CDH3P22223 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CDH3P22223 AC079089.2-201ENST00000531211 1277 ntBASIC20.85■□□□□ 0.93
CDH3P22223 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.85■□□□□ 0.93
CDH3P22223 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH3P22223 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.85■□□□□ 0.93
CDH3P22223 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH3P22223 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDH3P22223 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
CDH3P22223 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDH3P22223 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDH3P22223 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDH3P22223 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CDH3P22223 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CDH3P22223 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CDH3P22223 TPRG1LP1-201ENST00000598702 760 ntBASIC20.84■□□□□ 0.93
CDH3P22223 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.84■□□□□ 0.93
CDH3P22223 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.84■□□□□ 0.93
CDH3P22223 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.84■□□□□ 0.93
CDH3P22223 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDH3P22223 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.83■□□□□ 0.93
CDH3P22223 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CDH3P22223 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CDH3P22223 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CDH3P22223 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
CDH3P22223 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.83■□□□□ 0.93
CDH3P22223 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
CDH3P22223 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.83■□□□□ 0.93
CDH3P22223 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CDH3P22223 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CDH3P22223 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.83■□□□□ 0.93
CDH3P22223 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CDH3P22223 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CDH3P22223 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
CDH3P22223 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CDH3P22223 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
CDH3P22223 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDH3P22223 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CDH3P22223 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.82■□□□□ 0.92
CDH3P22223 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDH3P22223 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CDH3P22223 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.82■□□□□ 0.92
CDH3P22223 KRT18P5-201ENST00000436075 1291 ntBASIC20.82■□□□□ 0.92
CDH3P22223 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CDH3P22223 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.82■□□□□ 0.92
CDH3P22223 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDH3P22223 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
CDH3P22223 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDH3P22223 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
CDH3P22223 RNF165-205ENST00000588679 2904 ntBASIC20.81■□□□□ 0.92
CDH3P22223 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDH3P22223 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDH3P22223 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDH3P22223 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.81■□□□□ 0.92
CDH3P22223 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDH3P22223 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDH3P22223 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDH3P22223 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDH3P22223 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms