Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.31■■□□□ 1
XRCC1P18887 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.31■■□□□ 1
XRCC1P18887 AC105233.4-201ENST00000642045 216 ntBASIC21.31■■□□□ 1
XRCC1P18887 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
XRCC1P18887 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.31■■□□□ 1
XRCC1P18887 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
XRCC1P18887 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
XRCC1P18887 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.31■■□□□ 1
XRCC1P18887 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
XRCC1P18887 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
XRCC1P18887 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
XRCC1P18887 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
XRCC1P18887 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
XRCC1P18887 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.3■■□□□ 1
XRCC1P18887 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.3■■□□□ 1
XRCC1P18887 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
XRCC1P18887 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
XRCC1P18887 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
XRCC1P18887 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.3■■□□□ 1
XRCC1P18887 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.3■■□□□ 1
XRCC1P18887 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
XRCC1P18887 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
XRCC1P18887 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.29■■□□□ 1
XRCC1P18887 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.29■■□□□ 1
XRCC1P18887 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
XRCC1P18887 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
XRCC1P18887 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
XRCC1P18887 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
XRCC1P18887 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.29■■□□□ 1
XRCC1P18887 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
XRCC1P18887 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
XRCC1P18887 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
XRCC1P18887 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
XRCC1P18887 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
XRCC1P18887 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
XRCC1P18887 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
XRCC1P18887 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
XRCC1P18887 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.29■■□□□ 1
XRCC1P18887 MIR6084-201ENST00000622012 110 ntBASIC21.29■■□□□ 1
XRCC1P18887 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.29■■□□□ 1
XRCC1P18887 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.29■■□□□ 1
XRCC1P18887 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.29■■□□□ 1
XRCC1P18887 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
XRCC1P18887 AC080038.3-201ENST00000623346 1952 ntBASIC21.28■■□□□ 1
XRCC1P18887 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.28■■□□□ 1
XRCC1P18887 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.28■■□□□ 1
XRCC1P18887 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.28■■□□□ 1
XRCC1P18887 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
XRCC1P18887 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.28■■□□□ 1
XRCC1P18887 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC21.28■■□□□ 1
XRCC1P18887 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
XRCC1P18887 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
XRCC1P18887 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
XRCC1P18887 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
XRCC1P18887 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
XRCC1P18887 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
XRCC1P18887 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.28■■□□□ 1
XRCC1P18887 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.27■■□□□ 1
XRCC1P18887 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
XRCC1P18887 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.27■■□□□ 1
XRCC1P18887 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.27■■□□□ 1
XRCC1P18887 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.27■■□□□ 1
XRCC1P18887 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.27■■□□□ 1
XRCC1P18887 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.27■■□□□ 1
XRCC1P18887 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.27■■□□□ 1
XRCC1P18887 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
XRCC1P18887 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
XRCC1P18887 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
XRCC1P18887 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.27■□□□□ 0.99
XRCC1P18887 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
XRCC1P18887 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
XRCC1P18887 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.26■□□□□ 0.99
XRCC1P18887 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
XRCC1P18887 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
XRCC1P18887 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.26■□□□□ 0.99
XRCC1P18887 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
XRCC1P18887 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.26■□□□□ 0.99
XRCC1P18887 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
XRCC1P18887 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
XRCC1P18887 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.26■□□□□ 0.99
XRCC1P18887 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
XRCC1P18887 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.26■□□□□ 0.99
XRCC1P18887 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.25■□□□□ 0.99
XRCC1P18887 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
XRCC1P18887 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
XRCC1P18887 OXCT2P1-201ENST00000447263 1535 ntBASIC21.25■□□□□ 0.99
XRCC1P18887 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.25■□□□□ 0.99
XRCC1P18887 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
XRCC1P18887 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
XRCC1P18887 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
XRCC1P18887 AC034268.1-201ENST00000441047 882 ntBASIC21.25■□□□□ 0.99
XRCC1P18887 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
XRCC1P18887 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.25■□□□□ 0.99
XRCC1P18887 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.25■□□□□ 0.99
XRCC1P18887 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
XRCC1P18887 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.25■□□□□ 0.99
XRCC1P18887 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.25■□□□□ 0.99
XRCC1P18887 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.25■□□□□ 0.99
XRCC1P18887 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
XRCC1P18887 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms