Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCNAP12004 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.78■□□□□ 0.92
PCNAP12004 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
PCNAP12004 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.78■□□□□ 0.92
PCNAP12004 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
PCNAP12004 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
PCNAP12004 BX842568.3-201ENST00000418104 571 ntBASIC20.78■□□□□ 0.92
PCNAP12004 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCNAP12004 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCNAP12004 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.78■□□□□ 0.92
PCNAP12004 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PCNAP12004 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
PCNAP12004 OXCT2P1-201ENST00000447263 1535 ntBASIC20.78■□□□□ 0.92
PCNAP12004 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
PCNAP12004 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCNAP12004 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.77■□□□□ 0.92
PCNAP12004 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
PCNAP12004 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCNAP12004 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCNAP12004 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCNAP12004 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCNAP12004 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.77■□□□□ 0.92
PCNAP12004 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.77■□□□□ 0.92
PCNAP12004 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.77■□□□□ 0.92
PCNAP12004 AC126544.1-201ENST00000580842 1059 ntBASIC20.77■□□□□ 0.92
PCNAP12004 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.77■□□□□ 0.92
PCNAP12004 AC008764.7-201ENST00000593779 1081 ntBASIC20.77■□□□□ 0.92
PCNAP12004 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.77■□□□□ 0.92
PCNAP12004 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.77■□□□□ 0.91
PCNAP12004 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
PCNAP12004 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCNAP12004 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCNAP12004 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCNAP12004 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.76■□□□□ 0.91
PCNAP12004 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
PCNAP12004 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
PCNAP12004 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.76■□□□□ 0.91
PCNAP12004 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PCNAP12004 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.76■□□□□ 0.91
PCNAP12004 AC233992.3-201ENST00000607491 485 ntBASIC20.76■□□□□ 0.91
PCNAP12004 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.76■□□□□ 0.91
PCNAP12004 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.76■□□□□ 0.91
PCNAP12004 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.76■□□□□ 0.91
PCNAP12004 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCNAP12004 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
PCNAP12004 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCNAP12004 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.76■□□□□ 0.91
PCNAP12004 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.76■□□□□ 0.91
PCNAP12004 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCNAP12004 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCNAP12004 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCNAP12004 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCNAP12004 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.75■□□□□ 0.91
PCNAP12004 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PCNAP12004 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PCNAP12004 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.75■□□□□ 0.91
PCNAP12004 AC106739.1-201ENST00000617035 715 ntBASIC20.75■□□□□ 0.91
PCNAP12004 AC110285.6-201ENST00000617652 491 ntBASIC20.75■□□□□ 0.91
PCNAP12004 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.75■□□□□ 0.91
PCNAP12004 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCNAP12004 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCNAP12004 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCNAP12004 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCNAP12004 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCNAP12004 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.75■□□□□ 0.91
PCNAP12004 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCNAP12004 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.75■□□□□ 0.91
PCNAP12004 FAM99A-202ENST00000538190 1989 ntBASIC20.75■□□□□ 0.91
PCNAP12004 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCNAP12004 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
PCNAP12004 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCNAP12004 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PCNAP12004 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCNAP12004 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCNAP12004 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCNAP12004 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCNAP12004 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCNAP12004 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.74■□□□□ 0.91
PCNAP12004 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.74■□□□□ 0.91
PCNAP12004 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PCNAP12004 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
PCNAP12004 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCNAP12004 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCNAP12004 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCNAP12004 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCNAP12004 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCNAP12004 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.73■□□□□ 0.91
PCNAP12004 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCNAP12004 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
PCNAP12004 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCNAP12004 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCNAP12004 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.73■□□□□ 0.91
PCNAP12004 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PCNAP12004 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCNAP12004 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCNAP12004 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCNAP12004 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.72■□□□□ 0.91
PCNAP12004 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.72■□□□□ 0.91
PCNAP12004 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCNAP12004 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms