Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.87■■□□□ 1.09
TOP3BO95985 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.87■■□□□ 1.09
TOP3BO95985 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TOP3BO95985 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.87■■□□□ 1.09
TOP3BO95985 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.86■■□□□ 1.09
TOP3BO95985 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TOP3BO95985 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
TOP3BO95985 TERF1P2-201ENST00000583350 1212 ntBASIC21.86■■□□□ 1.09
TOP3BO95985 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.86■■□□□ 1.09
TOP3BO95985 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.86■■□□□ 1.09
TOP3BO95985 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TOP3BO95985 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
TOP3BO95985 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.86■■□□□ 1.09
TOP3BO95985 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
TOP3BO95985 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TOP3BO95985 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TOP3BO95985 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.85■■□□□ 1.09
TOP3BO95985 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
TOP3BO95985 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
TOP3BO95985 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
TOP3BO95985 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TOP3BO95985 AL355802.2-201ENST00000402069 882 ntBASIC21.85■■□□□ 1.09
TOP3BO95985 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
TOP3BO95985 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.85■■□□□ 1.09
TOP3BO95985 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.85■■□□□ 1.09
TOP3BO95985 AC073111.5-205ENST00000641717 521 ntBASIC21.85■■□□□ 1.09
TOP3BO95985 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
TOP3BO95985 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TOP3BO95985 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
TOP3BO95985 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.85■■□□□ 1.09
TOP3BO95985 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.85■■□□□ 1.09
TOP3BO95985 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TOP3BO95985 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TOP3BO95985 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TOP3BO95985 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TOP3BO95985 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
TOP3BO95985 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TOP3BO95985 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.84■■□□□ 1.09
TOP3BO95985 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
TOP3BO95985 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.84■■□□□ 1.09
TOP3BO95985 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
TOP3BO95985 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.84■■□□□ 1.09
TOP3BO95985 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
TOP3BO95985 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TOP3BO95985 MIR572-201ENST00000384983 95 ntBASIC21.84■■□□□ 1.09
TOP3BO95985 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.84■■□□□ 1.09
TOP3BO95985 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TOP3BO95985 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
TOP3BO95985 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
TOP3BO95985 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TOP3BO95985 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TOP3BO95985 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TOP3BO95985 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.83■■□□□ 1.09
TOP3BO95985 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.83■■□□□ 1.09
TOP3BO95985 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.09
TOP3BO95985 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TOP3BO95985 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TOP3BO95985 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TOP3BO95985 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TOP3BO95985 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.83■■□□□ 1.09
TOP3BO95985 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.83■■□□□ 1.09
TOP3BO95985 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.83■■□□□ 1.09
TOP3BO95985 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.83■■□□□ 1.09
TOP3BO95985 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.83■■□□□ 1.09
TOP3BO95985 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.83■■□□□ 1.09
TOP3BO95985 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TOP3BO95985 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.83■■□□□ 1.09
TOP3BO95985 pRNA.6-201ENST00000610482 90 ntBASIC21.83■■□□□ 1.09
TOP3BO95985 pRNA.5-201ENST00000612139 90 ntBASIC21.83■■□□□ 1.09
TOP3BO95985 pRNA.11-201ENST00000618423 90 ntBASIC21.83■■□□□ 1.09
TOP3BO95985 pRNA.13-201ENST00000619112 90 ntBASIC21.83■■□□□ 1.09
TOP3BO95985 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
TOP3BO95985 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
TOP3BO95985 LINC01960-201ENST00000563759 1884 ntBASIC21.83■■□□□ 1.08
TOP3BO95985 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
TOP3BO95985 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
TOP3BO95985 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
TOP3BO95985 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TOP3BO95985 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
TOP3BO95985 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.82■■□□□ 1.08
TOP3BO95985 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.82■■□□□ 1.08
TOP3BO95985 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.82■■□□□ 1.08
TOP3BO95985 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.82■■□□□ 1.08
TOP3BO95985 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.82■■□□□ 1.08
TOP3BO95985 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.82■■□□□ 1.08
TOP3BO95985 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TOP3BO95985 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.82■■□□□ 1.08
TOP3BO95985 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TOP3BO95985 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TOP3BO95985 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TOP3BO95985 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
TOP3BO95985 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.82■■□□□ 1.08
TOP3BO95985 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TOP3BO95985 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TOP3BO95985 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.81■■□□□ 1.08
TOP3BO95985 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
TOP3BO95985 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.81■■□□□ 1.08
TOP3BO95985 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.81■■□□□ 1.08
TOP3BO95985 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.81■■□□□ 1.08
TOP3BO95985 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms