Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC24.16■■□□□ 1.46
MSH4O15457 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
MSH4O15457 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC24.16■■□□□ 1.46
MSH4O15457 LSR-203ENST00000360798 1963 ntTSL 2 BASIC24.16■■□□□ 1.46
MSH4O15457 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
MSH4O15457 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
MSH4O15457 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC24.16■■□□□ 1.46
MSH4O15457 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
MSH4O15457 AC026471.6-201ENST00000622954 1905 ntBASIC24.16■■□□□ 1.46
MSH4O15457 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC24.15■■□□□ 1.46
MSH4O15457 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
MSH4O15457 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
MSH4O15457 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC24.15■■□□□ 1.46
MSH4O15457 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC24.15■■□□□ 1.46
MSH4O15457 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC24.15■■□□□ 1.46
MSH4O15457 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC24.15■■□□□ 1.46
MSH4O15457 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC24.15■■□□□ 1.46
MSH4O15457 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
MSH4O15457 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
MSH4O15457 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
MSH4O15457 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
MSH4O15457 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
MSH4O15457 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.46
MSH4O15457 AL117328.2-201ENST00000624617 1940 ntBASIC24.14■■□□□ 1.46
MSH4O15457 PARL-206ENST00000435888 1098 ntTSL 5 BASIC24.14■■□□□ 1.45
MSH4O15457 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.45
MSH4O15457 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC24.14■■□□□ 1.45
MSH4O15457 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC24.14■■□□□ 1.45
MSH4O15457 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC24.14■■□□□ 1.45
MSH4O15457 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC24.14■■□□□ 1.45
MSH4O15457 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC24.13■■□□□ 1.45
MSH4O15457 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
MSH4O15457 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC24.13■■□□□ 1.45
MSH4O15457 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
MSH4O15457 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
MSH4O15457 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC24.13■■□□□ 1.45
MSH4O15457 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC24.13■■□□□ 1.45
MSH4O15457 AC104564.3-201ENST00000582367 638 ntBASIC24.13■■□□□ 1.45
MSH4O15457 MFF-207ENST00000409565 1548 ntTSL 2 BASIC24.13■■□□□ 1.45
MSH4O15457 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
MSH4O15457 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
MSH4O15457 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
MSH4O15457 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
MSH4O15457 FAM99A-202ENST00000538190 1989 ntBASIC24.12■■□□□ 1.45
MSH4O15457 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
MSH4O15457 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
MSH4O15457 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC24.12■■□□□ 1.45
MSH4O15457 GALNS-213ENST00000569433 723 ntTSL 3 BASIC24.12■■□□□ 1.45
MSH4O15457 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC24.12■■□□□ 1.45
MSH4O15457 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC24.12■■□□□ 1.45
MSH4O15457 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC24.12■■□□□ 1.45
MSH4O15457 KRT87P-202ENST00000534226 1464 ntBASIC24.12■■□□□ 1.45
MSH4O15457 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC24.12■■□□□ 1.45
MSH4O15457 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
MSH4O15457 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
MSH4O15457 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
MSH4O15457 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC24.11■■□□□ 1.45
MSH4O15457 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
MSH4O15457 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
MSH4O15457 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC24.11■■□□□ 1.45
MSH4O15457 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC24.11■■□□□ 1.45
MSH4O15457 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC24.11■■□□□ 1.45
MSH4O15457 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC24.11■■□□□ 1.45
MSH4O15457 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC24.11■■□□□ 1.45
MSH4O15457 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC24.11■■□□□ 1.45
MSH4O15457 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC24.11■■□□□ 1.45
MSH4O15457 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
MSH4O15457 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
MSH4O15457 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
MSH4O15457 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
MSH4O15457 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC24.11■■□□□ 1.45
MSH4O15457 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
MSH4O15457 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
MSH4O15457 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
MSH4O15457 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
MSH4O15457 AC022517.1-201ENST00000592429 346 ntBASIC24.1■■□□□ 1.45
MSH4O15457 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC24.1■■□□□ 1.45
MSH4O15457 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
MSH4O15457 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
MSH4O15457 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
MSH4O15457 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
MSH4O15457 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
MSH4O15457 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC24.09■■□□□ 1.45
MSH4O15457 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC24.09■■□□□ 1.45
MSH4O15457 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC24.09■■□□□ 1.45
MSH4O15457 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC24.09■■□□□ 1.45
MSH4O15457 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC24.09■■□□□ 1.45
MSH4O15457 FXN-202ENST00000396364 980 ntTSL 5 BASIC24.09■■□□□ 1.45
MSH4O15457 AC092666.2-201ENST00000613287 246 ntBASIC24.09■■□□□ 1.45
MSH4O15457 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
MSH4O15457 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
MSH4O15457 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
MSH4O15457 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC24.08■■□□□ 1.45
MSH4O15457 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
MSH4O15457 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
MSH4O15457 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC24.08■■□□□ 1.45
MSH4O15457 TESC-206ENST00000541210 936 ntTSL 3 BASIC24.08■■□□□ 1.45
MSH4O15457 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC24.08■■□□□ 1.45
MSH4O15457 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC24.08■■□□□ 1.45
MSH4O15457 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms