Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC16.89■□□□□ 0.29
COL6A5A8TX70 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC16.89■□□□□ 0.29
COL6A5A8TX70 SNX21-213ENST00000614929 587 ntTSL 5 BASIC16.89■□□□□ 0.29
COL6A5A8TX70 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A5A8TX70 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A5A8TX70 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A5A8TX70 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A5A8TX70 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC16.89■□□□□ 0.29
COL6A5A8TX70 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC16.89■□□□□ 0.29
COL6A5A8TX70 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC16.89■□□□□ 0.29
COL6A5A8TX70 AL353708.3-201ENST00000610272 989 ntBASIC16.89■□□□□ 0.29
COL6A5A8TX70 AL590326.2-201ENST00000625139 305 ntBASIC16.89■□□□□ 0.29
COL6A5A8TX70 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A5A8TX70 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
COL6A5A8TX70 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A5A8TX70 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
COL6A5A8TX70 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A5A8TX70 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
COL6A5A8TX70 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC16.88■□□□□ 0.29
COL6A5A8TX70 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A5A8TX70 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC16.88■□□□□ 0.29
COL6A5A8TX70 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC16.88■□□□□ 0.29
COL6A5A8TX70 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A5A8TX70 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
COL6A5A8TX70 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A5A8TX70 AC010141.3-201ENST00000456659 717 ntBASIC16.88■□□□□ 0.29
COL6A5A8TX70 TSPY15P-201ENST00000457163 923 ntBASIC16.88■□□□□ 0.29
COL6A5A8TX70 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC16.88■□□□□ 0.29
COL6A5A8TX70 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A5A8TX70 DUSP8P5-201ENST00000422884 1815 ntBASIC16.88■□□□□ 0.29
COL6A5A8TX70 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC16.88■□□□□ 0.29
COL6A5A8TX70 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC16.88■□□□□ 0.29
COL6A5A8TX70 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A5A8TX70 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A5A8TX70 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A5A8TX70 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A5A8TX70 RPS2P55-201ENST00000397318 883 ntBASIC16.87■□□□□ 0.29
COL6A5A8TX70 TSPY7P-201ENST00000431358 1114 ntBASIC16.87■□□□□ 0.29
COL6A5A8TX70 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A5A8TX70 AC107956.1-201ENST00000494359 873 ntBASIC16.87■□□□□ 0.29
COL6A5A8TX70 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.87■□□□□ 0.29
COL6A5A8TX70 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC16.87■□□□□ 0.29
COL6A5A8TX70 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC16.87■□□□□ 0.29
COL6A5A8TX70 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A5A8TX70 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
COL6A5A8TX70 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A5A8TX70 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A5A8TX70 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
COL6A5A8TX70 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC16.87■□□□□ 0.29
COL6A5A8TX70 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A5A8TX70 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
COL6A5A8TX70 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A5A8TX70 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A5A8TX70 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.87■□□□□ 0.29
COL6A5A8TX70 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC16.87■□□□□ 0.29
COL6A5A8TX70 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC16.87■□□□□ 0.29
COL6A5A8TX70 DHDH-203ENST00000522614 776 ntTSL 5 BASIC16.87■□□□□ 0.29
COL6A5A8TX70 AL355075.4-201ENST00000554988 638 ntBASIC16.87■□□□□ 0.29
COL6A5A8TX70 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.87■□□□□ 0.29
COL6A5A8TX70 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC16.87■□□□□ 0.29
COL6A5A8TX70 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A5A8TX70 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A5A8TX70 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A5A8TX70 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A5A8TX70 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
COL6A5A8TX70 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
COL6A5A8TX70 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A5A8TX70 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC16.86■□□□□ 0.29
COL6A5A8TX70 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.86■□□□□ 0.29
COL6A5A8TX70 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC16.86■□□□□ 0.29
COL6A5A8TX70 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC16.86■□□□□ 0.29
COL6A5A8TX70 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC16.86■□□□□ 0.29
COL6A5A8TX70 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A5A8TX70 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC16.85■□□□□ 0.29
COL6A5A8TX70 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC16.85■□□□□ 0.29
COL6A5A8TX70 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A5A8TX70 AC069544.1-201ENST00000609399 999 ntBASIC16.85■□□□□ 0.29
COL6A5A8TX70 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A5A8TX70 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A5A8TX70 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC16.85■□□□□ 0.29
COL6A5A8TX70 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC16.85■□□□□ 0.29
COL6A5A8TX70 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.85■□□□□ 0.29
COL6A5A8TX70 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC16.85■□□□□ 0.29
COL6A5A8TX70 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.85■□□□□ 0.29
COL6A5A8TX70 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A5A8TX70 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A5A8TX70 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A5A8TX70 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A5A8TX70 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC16.84■□□□□ 0.29
COL6A5A8TX70 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
COL6A5A8TX70 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A5A8TX70 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A5A8TX70 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A5A8TX70 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A5A8TX70 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A5A8TX70 ISG20-202ENST00000379224 540 ntTSL 3 BASIC16.84■□□□□ 0.29
COL6A5A8TX70 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A5A8TX70 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC16.84■□□□□ 0.29
COL6A5A8TX70 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A5A8TX70 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms