Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC22.45■■□□□ 1.18
PCDHA3Q9Y5H8 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
PCDHA3Q9Y5H8 SRR-208ENST00000576848 588 ntTSL 4 BASIC22.45■■□□□ 1.18
PCDHA3Q9Y5H8 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC22.45■■□□□ 1.18
PCDHA3Q9Y5H8 AC104564.3-201ENST00000582367 638 ntBASIC22.45■■□□□ 1.18
PCDHA3Q9Y5H8 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC22.45■■□□□ 1.18
PCDHA3Q9Y5H8 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC22.45■■□□□ 1.18
PCDHA3Q9Y5H8 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PCDHA3Q9Y5H8 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC22.45■■□□□ 1.18
PCDHA3Q9Y5H8 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC22.44■■□□□ 1.18
PCDHA3Q9Y5H8 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
PCDHA3Q9Y5H8 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
PCDHA3Q9Y5H8 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
PCDHA3Q9Y5H8 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC22.44■■□□□ 1.18
PCDHA3Q9Y5H8 PTCHD3P2-201ENST00000424937 1205 ntBASIC22.44■■□□□ 1.18
PCDHA3Q9Y5H8 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
PCDHA3Q9Y5H8 AL138724.1-201ENST00000606771 1088 ntBASIC22.44■■□□□ 1.18
PCDHA3Q9Y5H8 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
PCDHA3Q9Y5H8 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC22.43■■□□□ 1.18
PCDHA3Q9Y5H8 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC22.43■■□□□ 1.18
PCDHA3Q9Y5H8 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC22.43■■□□□ 1.18
PCDHA3Q9Y5H8 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC22.43■■□□□ 1.18
PCDHA3Q9Y5H8 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC22.43■■□□□ 1.18
PCDHA3Q9Y5H8 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
PCDHA3Q9Y5H8 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
PCDHA3Q9Y5H8 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PCDHA3Q9Y5H8 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PCDHA3Q9Y5H8 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PCDHA3Q9Y5H8 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
PCDHA3Q9Y5H8 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
PCDHA3Q9Y5H8 SERBP1P1-201ENST00000396021 1160 ntBASIC22.43■■□□□ 1.18
PCDHA3Q9Y5H8 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC22.43■■□□□ 1.18
PCDHA3Q9Y5H8 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
PCDHA3Q9Y5H8 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
PCDHA3Q9Y5H8 MFF-203ENST00000349901 1716 ntTSL 2 BASIC22.43■■□□□ 1.18
PCDHA3Q9Y5H8 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
PCDHA3Q9Y5H8 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
PCDHA3Q9Y5H8 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC22.42■■□□□ 1.18
PCDHA3Q9Y5H8 RPP21-222ENST00000433076 577 ntTSL 2 BASIC22.42■■□□□ 1.18
PCDHA3Q9Y5H8 AL356441.2-201ENST00000443009 864 ntBASIC22.42■■□□□ 1.18
PCDHA3Q9Y5H8 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC22.42■■□□□ 1.18
PCDHA3Q9Y5H8 MIR4466-201ENST00000606121 54 ntBASIC22.42■■□□□ 1.18
PCDHA3Q9Y5H8 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
PCDHA3Q9Y5H8 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC22.42■■□□□ 1.18
PCDHA3Q9Y5H8 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
PCDHA3Q9Y5H8 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC22.41■■□□□ 1.18
PCDHA3Q9Y5H8 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
PCDHA3Q9Y5H8 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC22.41■■□□□ 1.18
PCDHA3Q9Y5H8 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PCDHA3Q9Y5H8 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC22.41■■□□□ 1.18
PCDHA3Q9Y5H8 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
PCDHA3Q9Y5H8 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
PCDHA3Q9Y5H8 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC22.41■■□□□ 1.18
PCDHA3Q9Y5H8 DUX4L19-201ENST00000557448 1267 ntBASIC22.41■■□□□ 1.18
PCDHA3Q9Y5H8 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC22.41■■□□□ 1.18
PCDHA3Q9Y5H8 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC22.41■■□□□ 1.18
PCDHA3Q9Y5H8 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC22.41■■□□□ 1.18
PCDHA3Q9Y5H8 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PCDHA3Q9Y5H8 AF106564.1-201ENST00000607058 2553 ntBASIC22.41■■□□□ 1.18
PCDHA3Q9Y5H8 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
PCDHA3Q9Y5H8 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
PCDHA3Q9Y5H8 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
PCDHA3Q9Y5H8 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
PCDHA3Q9Y5H8 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
PCDHA3Q9Y5H8 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC22.4■■□□□ 1.18
PCDHA3Q9Y5H8 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC22.4■■□□□ 1.18
PCDHA3Q9Y5H8 SYT6-210ENST00000641643 1587 ntBASIC22.4■■□□□ 1.18
PCDHA3Q9Y5H8 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
PCDHA3Q9Y5H8 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
PCDHA3Q9Y5H8 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC22.4■■□□□ 1.18
PCDHA3Q9Y5H8 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
PCDHA3Q9Y5H8 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
PCDHA3Q9Y5H8 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.18
PCDHA3Q9Y5H8 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC22.39■■□□□ 1.18
PCDHA3Q9Y5H8 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
PCDHA3Q9Y5H8 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC22.39■■□□□ 1.18
PCDHA3Q9Y5H8 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
PCDHA3Q9Y5H8 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC22.39■■□□□ 1.17
PCDHA3Q9Y5H8 AC136469.2-201ENST00000623944 1028 ntBASIC22.39■■□□□ 1.17
PCDHA3Q9Y5H8 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
PCDHA3Q9Y5H8 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
PCDHA3Q9Y5H8 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
PCDHA3Q9Y5H8 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
PCDHA3Q9Y5H8 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
PCDHA3Q9Y5H8 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
PCDHA3Q9Y5H8 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
PCDHA3Q9Y5H8 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC22.38■■□□□ 1.17
PCDHA3Q9Y5H8 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC22.38■■□□□ 1.17
PCDHA3Q9Y5H8 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
PCDHA3Q9Y5H8 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
PCDHA3Q9Y5H8 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC22.38■■□□□ 1.17
PCDHA3Q9Y5H8 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC22.38■■□□□ 1.17
PCDHA3Q9Y5H8 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC22.38■■□□□ 1.17
PCDHA3Q9Y5H8 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
PCDHA3Q9Y5H8 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
PCDHA3Q9Y5H8 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC22.38■■□□□ 1.17
PCDHA3Q9Y5H8 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC22.38■■□□□ 1.17
PCDHA3Q9Y5H8 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC22.37■■□□□ 1.17
PCDHA3Q9Y5H8 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
PCDHA3Q9Y5H8 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms