Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS29Q9UBQ0 AL136162.1-201ENST00000607711 1078 ntBASIC20.58■□□□□ 0.89
VPS29Q9UBQ0 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS29Q9UBQ0 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS29Q9UBQ0 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS29Q9UBQ0 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
VPS29Q9UBQ0 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
VPS29Q9UBQ0 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS29Q9UBQ0 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS29Q9UBQ0 AC026471.6-201ENST00000622954 1905 ntBASIC20.57■□□□□ 0.88
VPS29Q9UBQ0 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
VPS29Q9UBQ0 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
VPS29Q9UBQ0 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS29Q9UBQ0 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS29Q9UBQ0 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.57■□□□□ 0.88
VPS29Q9UBQ0 AC024257.2-201ENST00000549699 147 ntBASIC20.57■□□□□ 0.88
VPS29Q9UBQ0 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS29Q9UBQ0 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS29Q9UBQ0 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
VPS29Q9UBQ0 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 AC135279.3-201ENST00000610945 1311 ntBASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 AC026310.3-201ENST00000625186 2373 ntBASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 AL034346.1-201ENST00000568244 1277 ntBASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS29Q9UBQ0 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 AC233992.3-201ENST00000607491 485 ntBASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.55■□□□□ 0.88
VPS29Q9UBQ0 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.54■□□□□ 0.88
VPS29Q9UBQ0 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
VPS29Q9UBQ0 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS29Q9UBQ0 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS29Q9UBQ0 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.54■□□□□ 0.88
VPS29Q9UBQ0 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.54■□□□□ 0.88
VPS29Q9UBQ0 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.54■□□□□ 0.88
VPS29Q9UBQ0 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
VPS29Q9UBQ0 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS29Q9UBQ0 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS29Q9UBQ0 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS29Q9UBQ0 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS29Q9UBQ0 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS29Q9UBQ0 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS29Q9UBQ0 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS29Q9UBQ0 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS29Q9UBQ0 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.53■□□□□ 0.88
VPS29Q9UBQ0 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS29Q9UBQ0 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS29Q9UBQ0 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS29Q9UBQ0 AP004607.7-201ENST00000527152 1677 ntBASIC20.53■□□□□ 0.88
VPS29Q9UBQ0 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS29Q9UBQ0 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
VPS29Q9UBQ0 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.53■□□□□ 0.88
VPS29Q9UBQ0 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS29Q9UBQ0 AL137060.1-201ENST00000618151 2648 ntBASIC20.53■□□□□ 0.88
VPS29Q9UBQ0 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS29Q9UBQ0 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS29Q9UBQ0 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
VPS29Q9UBQ0 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.52■□□□□ 0.88
VPS29Q9UBQ0 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS29Q9UBQ0 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.52■□□□□ 0.88
VPS29Q9UBQ0 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.52■□□□□ 0.88
VPS29Q9UBQ0 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VPS29Q9UBQ0 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms