Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VSX1Q9NZR4 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VSX1Q9NZR4 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
VSX1Q9NZR4 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
VSX1Q9NZR4 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.15■□□□□ 0.66
VSX1Q9NZR4 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.15■□□□□ 0.66
VSX1Q9NZR4 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VSX1Q9NZR4 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VSX1Q9NZR4 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
VSX1Q9NZR4 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
VSX1Q9NZR4 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.66
VSX1Q9NZR4 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VSX1Q9NZR4 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.14■□□□□ 0.65
VSX1Q9NZR4 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
VSX1Q9NZR4 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.14■□□□□ 0.65
VSX1Q9NZR4 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.14■□□□□ 0.65
VSX1Q9NZR4 AL136116.3-201ENST00000402907 1138 ntBASIC19.14■□□□□ 0.65
VSX1Q9NZR4 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.14■□□□□ 0.65
VSX1Q9NZR4 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VSX1Q9NZR4 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.14■□□□□ 0.65
VSX1Q9NZR4 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.14■□□□□ 0.65
VSX1Q9NZR4 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VSX1Q9NZR4 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.14■□□□□ 0.65
VSX1Q9NZR4 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VSX1Q9NZR4 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.14■□□□□ 0.65
VSX1Q9NZR4 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VSX1Q9NZR4 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.13■□□□□ 0.65
VSX1Q9NZR4 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
VSX1Q9NZR4 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VSX1Q9NZR4 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VSX1Q9NZR4 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
VSX1Q9NZR4 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC19.13■□□□□ 0.65
VSX1Q9NZR4 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.13■□□□□ 0.65
VSX1Q9NZR4 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.13■□□□□ 0.65
VSX1Q9NZR4 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
VSX1Q9NZR4 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VSX1Q9NZR4 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VSX1Q9NZR4 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
VSX1Q9NZR4 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VSX1Q9NZR4 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VSX1Q9NZR4 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VSX1Q9NZR4 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VSX1Q9NZR4 AC026310.3-201ENST00000625186 2373 ntBASIC19.13■□□□□ 0.65
VSX1Q9NZR4 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.12■□□□□ 0.65
VSX1Q9NZR4 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VSX1Q9NZR4 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.12■□□□□ 0.65
VSX1Q9NZR4 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.12■□□□□ 0.65
VSX1Q9NZR4 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.12■□□□□ 0.65
VSX1Q9NZR4 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VSX1Q9NZR4 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
VSX1Q9NZR4 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VSX1Q9NZR4 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
VSX1Q9NZR4 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.12■□□□□ 0.65
VSX1Q9NZR4 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.12■□□□□ 0.65
VSX1Q9NZR4 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
VSX1Q9NZR4 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VSX1Q9NZR4 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VSX1Q9NZR4 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VSX1Q9NZR4 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VSX1Q9NZR4 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC19.12■□□□□ 0.65
VSX1Q9NZR4 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
VSX1Q9NZR4 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.12■□□□□ 0.65
VSX1Q9NZR4 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VSX1Q9NZR4 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VSX1Q9NZR4 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VSX1Q9NZR4 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.11■□□□□ 0.65
VSX1Q9NZR4 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VSX1Q9NZR4 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.11■□□□□ 0.65
VSX1Q9NZR4 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VSX1Q9NZR4 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.11■□□□□ 0.65
VSX1Q9NZR4 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.11■□□□□ 0.65
VSX1Q9NZR4 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VSX1Q9NZR4 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VSX1Q9NZR4 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
VSX1Q9NZR4 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.11■□□□□ 0.65
VSX1Q9NZR4 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VSX1Q9NZR4 AC026471.6-201ENST00000622954 1905 ntBASIC19.11■□□□□ 0.65
VSX1Q9NZR4 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.11■□□□□ 0.65
VSX1Q9NZR4 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
VSX1Q9NZR4 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.11■□□□□ 0.65
VSX1Q9NZR4 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VSX1Q9NZR4 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VSX1Q9NZR4 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VSX1Q9NZR4 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
VSX1Q9NZR4 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VSX1Q9NZR4 AL034346.1-201ENST00000568244 1277 ntBASIC19.1■□□□□ 0.65
VSX1Q9NZR4 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
VSX1Q9NZR4 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.1■□□□□ 0.65
VSX1Q9NZR4 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.1■□□□□ 0.65
VSX1Q9NZR4 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VSX1Q9NZR4 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VSX1Q9NZR4 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VSX1Q9NZR4 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VSX1Q9NZR4 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
VSX1Q9NZR4 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VSX1Q9NZR4 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
VSX1Q9NZR4 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VSX1Q9NZR4 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
VSX1Q9NZR4 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
VSX1Q9NZR4 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms