Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MKS1Q9NXB0 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
MKS1Q9NXB0 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
MKS1Q9NXB0 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MKS1Q9NXB0 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.23■□□□□ 0.99
MKS1Q9NXB0 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MKS1Q9NXB0 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MKS1Q9NXB0 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
MKS1Q9NXB0 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MKS1Q9NXB0 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MKS1Q9NXB0 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
MKS1Q9NXB0 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.22■□□□□ 0.99
MKS1Q9NXB0 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MKS1Q9NXB0 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
MKS1Q9NXB0 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
MKS1Q9NXB0 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MKS1Q9NXB0 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
MKS1Q9NXB0 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.22■□□□□ 0.99
MKS1Q9NXB0 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.22■□□□□ 0.99
MKS1Q9NXB0 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
MKS1Q9NXB0 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.22■□□□□ 0.99
MKS1Q9NXB0 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MKS1Q9NXB0 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MKS1Q9NXB0 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
MKS1Q9NXB0 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.22■□□□□ 0.99
MKS1Q9NXB0 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.21■□□□□ 0.99
MKS1Q9NXB0 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MKS1Q9NXB0 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
MKS1Q9NXB0 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MKS1Q9NXB0 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MKS1Q9NXB0 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MKS1Q9NXB0 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
MKS1Q9NXB0 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.21■□□□□ 0.99
MKS1Q9NXB0 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.21■□□□□ 0.99
MKS1Q9NXB0 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.21■□□□□ 0.99
MKS1Q9NXB0 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.21■□□□□ 0.99
MKS1Q9NXB0 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MKS1Q9NXB0 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.21■□□□□ 0.99
MKS1Q9NXB0 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MKS1Q9NXB0 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
MKS1Q9NXB0 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.2■□□□□ 0.99
MKS1Q9NXB0 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.2■□□□□ 0.99
MKS1Q9NXB0 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.2■□□□□ 0.98
MKS1Q9NXB0 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.2■□□□□ 0.98
MKS1Q9NXB0 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.2■□□□□ 0.98
MKS1Q9NXB0 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
MKS1Q9NXB0 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MKS1Q9NXB0 OR2I1P-207ENST00000453522 948 ntBASIC21.2■□□□□ 0.98
MKS1Q9NXB0 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
MKS1Q9NXB0 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.2■□□□□ 0.98
MKS1Q9NXB0 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MKS1Q9NXB0 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MKS1Q9NXB0 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MKS1Q9NXB0 AL049796.1-201ENST00000565336 1766 ntBASIC21.2■□□□□ 0.98
MKS1Q9NXB0 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.2■□□□□ 0.98
MKS1Q9NXB0 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MKS1Q9NXB0 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MKS1Q9NXB0 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MKS1Q9NXB0 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MKS1Q9NXB0 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MKS1Q9NXB0 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MKS1Q9NXB0 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
MKS1Q9NXB0 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
MKS1Q9NXB0 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MKS1Q9NXB0 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
MKS1Q9NXB0 AC006455.2-201ENST00000429931 906 ntBASIC21.19■□□□□ 0.98
MKS1Q9NXB0 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
MKS1Q9NXB0 pRNA.6-201ENST00000610482 90 ntBASIC21.19■□□□□ 0.98
MKS1Q9NXB0 pRNA.5-201ENST00000612139 90 ntBASIC21.19■□□□□ 0.98
MKS1Q9NXB0 pRNA.11-201ENST00000618423 90 ntBASIC21.19■□□□□ 0.98
MKS1Q9NXB0 pRNA.13-201ENST00000619112 90 ntBASIC21.19■□□□□ 0.98
MKS1Q9NXB0 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MKS1Q9NXB0 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.19■□□□□ 0.98
MKS1Q9NXB0 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MKS1Q9NXB0 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MKS1Q9NXB0 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MKS1Q9NXB0 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MKS1Q9NXB0 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MKS1Q9NXB0 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MKS1Q9NXB0 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
MKS1Q9NXB0 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MKS1Q9NXB0 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.18■□□□□ 0.98
MKS1Q9NXB0 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
MKS1Q9NXB0 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
MKS1Q9NXB0 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
MKS1Q9NXB0 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MKS1Q9NXB0 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.17■□□□□ 0.98
MKS1Q9NXB0 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
MKS1Q9NXB0 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.17■□□□□ 0.98
MKS1Q9NXB0 MIR6724-1-201ENST00000616420 92 ntBASIC21.17■□□□□ 0.98
MKS1Q9NXB0 MIR6724-2-201ENST00000616483 92 ntBASIC21.17■□□□□ 0.98
MKS1Q9NXB0 MIR6724-4-201ENST00000617390 92 ntBASIC21.17■□□□□ 0.98
MKS1Q9NXB0 MIR6724-3-201ENST00000622482 92 ntBASIC21.17■□□□□ 0.98
MKS1Q9NXB0 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MKS1Q9NXB0 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MKS1Q9NXB0 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.17■□□□□ 0.98
MKS1Q9NXB0 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
MKS1Q9NXB0 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
MKS1Q9NXB0 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MKS1Q9NXB0 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms