Protein–RNA interactions for Protein: Q9NRR5

UBQLN4, Ubiquilin-4, humanhuman

Predictions only

Length 601 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN4Q9NRR5 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
UBQLN4Q9NRR5 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
UBQLN4Q9NRR5 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
UBQLN4Q9NRR5 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
UBQLN4Q9NRR5 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.76■□□□□ 0.75
UBQLN4Q9NRR5 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
UBQLN4Q9NRR5 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
UBQLN4Q9NRR5 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.76■□□□□ 0.75
UBQLN4Q9NRR5 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
UBQLN4Q9NRR5 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.76■□□□□ 0.75
UBQLN4Q9NRR5 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
UBQLN4Q9NRR5 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
UBQLN4Q9NRR5 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
UBQLN4Q9NRR5 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
UBQLN4Q9NRR5 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
UBQLN4Q9NRR5 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
UBQLN4Q9NRR5 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
UBQLN4Q9NRR5 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.76■□□□□ 0.75
UBQLN4Q9NRR5 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 LINC00565-201ENST00000562710 2331 ntBASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
UBQLN4Q9NRR5 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
UBQLN4Q9NRR5 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
UBQLN4Q9NRR5 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
UBQLN4Q9NRR5 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
UBQLN4Q9NRR5 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
UBQLN4Q9NRR5 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
UBQLN4Q9NRR5 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
UBQLN4Q9NRR5 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
UBQLN4Q9NRR5 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
UBQLN4Q9NRR5 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
UBQLN4Q9NRR5 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.74■□□□□ 0.75
UBQLN4Q9NRR5 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.74■□□□□ 0.75
UBQLN4Q9NRR5 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
UBQLN4Q9NRR5 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
UBQLN4Q9NRR5 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
UBQLN4Q9NRR5 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.74■□□□□ 0.75
UBQLN4Q9NRR5 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
UBQLN4Q9NRR5 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
UBQLN4Q9NRR5 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
UBQLN4Q9NRR5 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.73■□□□□ 0.75
UBQLN4Q9NRR5 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
UBQLN4Q9NRR5 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
UBQLN4Q9NRR5 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.73■□□□□ 0.75
UBQLN4Q9NRR5 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
UBQLN4Q9NRR5 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.73■□□□□ 0.75
UBQLN4Q9NRR5 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.73■□□□□ 0.75
UBQLN4Q9NRR5 AC105265.2-201ENST00000467189 838 ntBASIC19.73■□□□□ 0.75
UBQLN4Q9NRR5 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.73■□□□□ 0.75
UBQLN4Q9NRR5 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.73■□□□□ 0.75
UBQLN4Q9NRR5 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.73■□□□□ 0.75
UBQLN4Q9NRR5 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.73■□□□□ 0.75
UBQLN4Q9NRR5 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
UBQLN4Q9NRR5 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
UBQLN4Q9NRR5 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
UBQLN4Q9NRR5 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
UBQLN4Q9NRR5 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
UBQLN4Q9NRR5 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
UBQLN4Q9NRR5 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
UBQLN4Q9NRR5 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
UBQLN4Q9NRR5 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
UBQLN4Q9NRR5 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
UBQLN4Q9NRR5 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.72■□□□□ 0.75
UBQLN4Q9NRR5 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.72■□□□□ 0.75
UBQLN4Q9NRR5 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.72■□□□□ 0.75
UBQLN4Q9NRR5 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
UBQLN4Q9NRR5 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.72■□□□□ 0.75
UBQLN4Q9NRR5 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
UBQLN4Q9NRR5 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
UBQLN4Q9NRR5 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
UBQLN4Q9NRR5 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
UBQLN4Q9NRR5 IRS3P-201ENST00000223076 1006 ntBASIC19.71■□□□□ 0.75
UBQLN4Q9NRR5 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
UBQLN4Q9NRR5 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.71■□□□□ 0.75
UBQLN4Q9NRR5 AL354811.1-201ENST00000610286 706 ntBASIC19.71■□□□□ 0.75
UBQLN4Q9NRR5 AL358852.1-201ENST00000623174 1268 ntBASIC19.71■□□□□ 0.75
UBQLN4Q9NRR5 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
UBQLN4Q9NRR5 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
UBQLN4Q9NRR5 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.71■□□□□ 0.75
UBQLN4Q9NRR5 BX005040.4-201ENST00000637145 1518 ntBASIC19.71■□□□□ 0.75
UBQLN4Q9NRR5 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms