Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
RPAP1Q9BWH6 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RPAP1Q9BWH6 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC26.18■■□□□ 1.78
RPAP1Q9BWH6 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC26.18■■□□□ 1.78
RPAP1Q9BWH6 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC26.18■■□□□ 1.78
RPAP1Q9BWH6 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC26.18■■□□□ 1.78
RPAP1Q9BWH6 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
RPAP1Q9BWH6 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RPAP1Q9BWH6 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC26.18■■□□□ 1.78
RPAP1Q9BWH6 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
RPAP1Q9BWH6 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
RPAP1Q9BWH6 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
RPAP1Q9BWH6 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
RPAP1Q9BWH6 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC26.17■■□□□ 1.78
RPAP1Q9BWH6 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC26.17■■□□□ 1.78
RPAP1Q9BWH6 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
RPAP1Q9BWH6 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC26.17■■□□□ 1.78
RPAP1Q9BWH6 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC26.17■■□□□ 1.78
RPAP1Q9BWH6 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
RPAP1Q9BWH6 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
RPAP1Q9BWH6 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC26.17■■□□□ 1.78
RPAP1Q9BWH6 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
RPAP1Q9BWH6 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC26.16■■□□□ 1.78
RPAP1Q9BWH6 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
RPAP1Q9BWH6 LINC01960-201ENST00000563759 1884 ntBASIC26.16■■□□□ 1.78
RPAP1Q9BWH6 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
RPAP1Q9BWH6 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
RPAP1Q9BWH6 AC080038.3-201ENST00000623346 1952 ntBASIC26.16■■□□□ 1.78
RPAP1Q9BWH6 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
RPAP1Q9BWH6 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
RPAP1Q9BWH6 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
RPAP1Q9BWH6 AC087239.1-201ENST00000622671 572 ntBASIC26.16■■□□□ 1.78
RPAP1Q9BWH6 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC26.16■■□□□ 1.78
RPAP1Q9BWH6 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
RPAP1Q9BWH6 GAS2L1P2-201ENST00000436355 1356 ntBASIC26.16■■□□□ 1.78
RPAP1Q9BWH6 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
RPAP1Q9BWH6 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
RPAP1Q9BWH6 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
RPAP1Q9BWH6 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC26.15■■□□□ 1.78
RPAP1Q9BWH6 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
RPAP1Q9BWH6 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
RPAP1Q9BWH6 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
RPAP1Q9BWH6 HSCB-202ENST00000398941 955 ntTSL 2 BASIC26.15■■□□□ 1.78
RPAP1Q9BWH6 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC26.15■■□□□ 1.78
RPAP1Q9BWH6 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
RPAP1Q9BWH6 USP45-205ENST00000472914 1617 ntTSL 5 BASIC26.15■■□□□ 1.78
RPAP1Q9BWH6 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
RPAP1Q9BWH6 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
RPAP1Q9BWH6 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC26.15■■□□□ 1.78
RPAP1Q9BWH6 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC26.15■■□□□ 1.78
RPAP1Q9BWH6 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC26.15■■□□□ 1.78
RPAP1Q9BWH6 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC26.14■■□□□ 1.78
RPAP1Q9BWH6 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC26.14■■□□□ 1.78
RPAP1Q9BWH6 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.78
RPAP1Q9BWH6 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
RPAP1Q9BWH6 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC26.14■■□□□ 1.78
RPAP1Q9BWH6 AC010141.3-201ENST00000456659 717 ntBASIC26.14■■□□□ 1.78
RPAP1Q9BWH6 DENND3-207ENST00000518347 850 ntTSL 2 BASIC26.14■■□□□ 1.78
RPAP1Q9BWH6 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC26.14■■□□□ 1.78
RPAP1Q9BWH6 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC26.14■■□□□ 1.78
RPAP1Q9BWH6 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
RPAP1Q9BWH6 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC26.14■■□□□ 1.77
RPAP1Q9BWH6 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
RPAP1Q9BWH6 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC26.14■■□□□ 1.77
RPAP1Q9BWH6 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
RPAP1Q9BWH6 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
RPAP1Q9BWH6 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
RPAP1Q9BWH6 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
RPAP1Q9BWH6 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC26.13■■□□□ 1.77
RPAP1Q9BWH6 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
RPAP1Q9BWH6 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
RPAP1Q9BWH6 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC26.13■■□□□ 1.77
RPAP1Q9BWH6 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC26.13■■□□□ 1.77
RPAP1Q9BWH6 AC137761.2-201ENST00000561729 223 ntBASIC26.13■■□□□ 1.77
RPAP1Q9BWH6 AC145350.3-201ENST00000569033 163 ntBASIC26.13■■□□□ 1.77
RPAP1Q9BWH6 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC26.13■■□□□ 1.77
RPAP1Q9BWH6 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC26.13■■□□□ 1.77
RPAP1Q9BWH6 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC26.13■■□□□ 1.77
RPAP1Q9BWH6 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
RPAP1Q9BWH6 BX005040.4-201ENST00000637145 1518 ntBASIC26.13■■□□□ 1.77
RPAP1Q9BWH6 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
RPAP1Q9BWH6 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
RPAP1Q9BWH6 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC26.12■■□□□ 1.77
RPAP1Q9BWH6 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC26.12■■□□□ 1.77
RPAP1Q9BWH6 AP004607.4-201ENST00000530158 1459 ntBASIC26.12■■□□□ 1.77
RPAP1Q9BWH6 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
RPAP1Q9BWH6 STX7-201ENST00000367937 1090 ntTSL 5 BASIC26.12■■□□□ 1.77
RPAP1Q9BWH6 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC26.12■■□□□ 1.77
RPAP1Q9BWH6 DBI-210ENST00000542275 757 ntTSL 5 BASIC26.12■■□□□ 1.77
RPAP1Q9BWH6 AC080038.1-201ENST00000611274 1154 ntBASIC26.12■■□□□ 1.77
RPAP1Q9BWH6 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC26.12■■□□□ 1.77
RPAP1Q9BWH6 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
RPAP1Q9BWH6 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC26.12■■□□□ 1.77
RPAP1Q9BWH6 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
RPAP1Q9BWH6 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC26.11■■□□□ 1.77
RPAP1Q9BWH6 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC26.11■■□□□ 1.77
RPAP1Q9BWH6 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
RPAP1Q9BWH6 AC004854.2-201ENST00000608450 1441 ntBASIC26.11■■□□□ 1.77
RPAP1Q9BWH6 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
RPAP1Q9BWH6 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC26.11■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms