Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
USHBP1Q8N6Y0 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC28.52■■■□□ 2.16
USHBP1Q8N6Y0 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
USHBP1Q8N6Y0 AC138907.5-202ENST00000569484 235 ntBASIC28.52■■■□□ 2.16
USHBP1Q8N6Y0 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC28.52■■■□□ 2.16
USHBP1Q8N6Y0 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC28.52■■■□□ 2.16
USHBP1Q8N6Y0 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
USHBP1Q8N6Y0 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC28.52■■■□□ 2.16
USHBP1Q8N6Y0 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC28.52■■■□□ 2.16
USHBP1Q8N6Y0 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC28.52■■■□□ 2.16
USHBP1Q8N6Y0 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC28.51■■■□□ 2.16
USHBP1Q8N6Y0 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC28.51■■■□□ 2.15
USHBP1Q8N6Y0 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
USHBP1Q8N6Y0 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
USHBP1Q8N6Y0 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC28.51■■■□□ 2.15
USHBP1Q8N6Y0 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC28.5■■■□□ 2.15
USHBP1Q8N6Y0 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
USHBP1Q8N6Y0 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
USHBP1Q8N6Y0 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC28.5■■■□□ 2.15
USHBP1Q8N6Y0 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC28.5■■■□□ 2.15
USHBP1Q8N6Y0 AC010536.3-201ENST00000620306 533 ntBASIC28.5■■■□□ 2.15
USHBP1Q8N6Y0 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
USHBP1Q8N6Y0 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC28.5■■■□□ 2.15
USHBP1Q8N6Y0 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
USHBP1Q8N6Y0 NAA20-201ENST00000310450 920 ntTSL 2 BASIC28.49■■■□□ 2.15
USHBP1Q8N6Y0 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC28.49■■■□□ 2.15
USHBP1Q8N6Y0 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC28.49■■■□□ 2.15
USHBP1Q8N6Y0 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC28.49■■■□□ 2.15
USHBP1Q8N6Y0 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC28.49■■■□□ 2.15
USHBP1Q8N6Y0 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC28.49■■■□□ 2.15
USHBP1Q8N6Y0 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC28.49■■■□□ 2.15
USHBP1Q8N6Y0 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
USHBP1Q8N6Y0 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
USHBP1Q8N6Y0 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC28.48■■■□□ 2.15
USHBP1Q8N6Y0 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC28.48■■■□□ 2.15
USHBP1Q8N6Y0 APTR-203ENST00000430801 583 ntTSL 5 BASIC28.48■■■□□ 2.15
USHBP1Q8N6Y0 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
USHBP1Q8N6Y0 KRT18P6-201ENST00000555540 1265 ntBASIC28.48■■■□□ 2.15
USHBP1Q8N6Y0 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
USHBP1Q8N6Y0 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC28.48■■■□□ 2.15
USHBP1Q8N6Y0 MIR4651-201ENST00000582622 73 ntBASIC28.48■■■□□ 2.15
USHBP1Q8N6Y0 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC28.48■■■□□ 2.15
USHBP1Q8N6Y0 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC28.47■■■□□ 2.15
USHBP1Q8N6Y0 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
USHBP1Q8N6Y0 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
USHBP1Q8N6Y0 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
USHBP1Q8N6Y0 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC28.47■■■□□ 2.15
USHBP1Q8N6Y0 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC28.47■■■□□ 2.15
USHBP1Q8N6Y0 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
USHBP1Q8N6Y0 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC28.47■■■□□ 2.15
USHBP1Q8N6Y0 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
USHBP1Q8N6Y0 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC28.47■■■□□ 2.15
USHBP1Q8N6Y0 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC28.47■■■□□ 2.15
USHBP1Q8N6Y0 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC28.47■■■□□ 2.15
USHBP1Q8N6Y0 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
USHBP1Q8N6Y0 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC28.47■■■□□ 2.15
USHBP1Q8N6Y0 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC28.47■■■□□ 2.15
USHBP1Q8N6Y0 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
USHBP1Q8N6Y0 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
USHBP1Q8N6Y0 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
USHBP1Q8N6Y0 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC28.46■■■□□ 2.15
USHBP1Q8N6Y0 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC28.46■■■□□ 2.15
USHBP1Q8N6Y0 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
USHBP1Q8N6Y0 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC28.45■■■□□ 2.15
USHBP1Q8N6Y0 AP006587.3-201ENST00000525742 1516 ntBASIC28.45■■■□□ 2.15
USHBP1Q8N6Y0 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
USHBP1Q8N6Y0 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC28.45■■■□□ 2.14
USHBP1Q8N6Y0 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC28.45■■■□□ 2.14
USHBP1Q8N6Y0 AC105036.2-201ENST00000569468 176 ntBASIC28.45■■■□□ 2.14
USHBP1Q8N6Y0 TMEM191A-211ENST00000637163 1067 ntBASIC28.45■■■□□ 2.14
USHBP1Q8N6Y0 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
USHBP1Q8N6Y0 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
USHBP1Q8N6Y0 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC28.45■■■□□ 2.14
USHBP1Q8N6Y0 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC28.44■■■□□ 2.14
USHBP1Q8N6Y0 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
USHBP1Q8N6Y0 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
USHBP1Q8N6Y0 SLC29A4P1-201ENST00000398760 971 ntBASIC28.44■■■□□ 2.14
USHBP1Q8N6Y0 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC28.44■■■□□ 2.14
USHBP1Q8N6Y0 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC28.44■■■□□ 2.14
USHBP1Q8N6Y0 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC28.44■■■□□ 2.14
USHBP1Q8N6Y0 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC28.43■■■□□ 2.14
USHBP1Q8N6Y0 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC28.43■■■□□ 2.14
USHBP1Q8N6Y0 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
USHBP1Q8N6Y0 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC28.43■■■□□ 2.14
USHBP1Q8N6Y0 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
USHBP1Q8N6Y0 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC28.43■■■□□ 2.14
USHBP1Q8N6Y0 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC28.43■■■□□ 2.14
USHBP1Q8N6Y0 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
USHBP1Q8N6Y0 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
USHBP1Q8N6Y0 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
USHBP1Q8N6Y0 FXN-202ENST00000396364 980 ntTSL 5 BASIC28.43■■■□□ 2.14
USHBP1Q8N6Y0 BMP1-204ENST00000397814 836 ntTSL 4 BASIC28.43■■■□□ 2.14
USHBP1Q8N6Y0 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
USHBP1Q8N6Y0 AF201337.1-201ENST00000520239 748 ntBASIC28.43■■■□□ 2.14
USHBP1Q8N6Y0 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC28.43■■■□□ 2.14
USHBP1Q8N6Y0 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC28.43■■■□□ 2.14
USHBP1Q8N6Y0 PFKL-212ENST00000628044 129 ntTSL 3 BASIC28.43■■■□□ 2.14
USHBP1Q8N6Y0 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC28.43■■■□□ 2.14
USHBP1Q8N6Y0 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
USHBP1Q8N6Y0 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC28.42■■■□□ 2.14
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms