Protein–RNA interactions for Protein: Q8N684

CPSF7, Cleavage and polyadenylation specificity factor subunit 7, humanhuman

Known RBP Predictions only

Length 471 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7Q8N684 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CPSF7Q8N684 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
CPSF7Q8N684 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CPSF7Q8N684 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CPSF7Q8N684 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.93■□□□□ 0.94
CPSF7Q8N684 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CPSF7Q8N684 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.93■□□□□ 0.94
CPSF7Q8N684 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CPSF7Q8N684 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
CPSF7Q8N684 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CPSF7Q8N684 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CPSF7Q8N684 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CPSF7Q8N684 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
CPSF7Q8N684 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CPSF7Q8N684 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CPSF7Q8N684 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CPSF7Q8N684 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CPSF7Q8N684 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
CPSF7Q8N684 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF7Q8N684 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF7Q8N684 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF7Q8N684 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.92■□□□□ 0.94
CPSF7Q8N684 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.92■□□□□ 0.94
CPSF7Q8N684 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF7Q8N684 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF7Q8N684 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
CPSF7Q8N684 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF7Q8N684 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF7Q8N684 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF7Q8N684 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF7Q8N684 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.92■□□□□ 0.94
CPSF7Q8N684 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF7Q8N684 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.92■□□□□ 0.94
CPSF7Q8N684 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF7Q8N684 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF7Q8N684 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF7Q8N684 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.92■□□□□ 0.94
CPSF7Q8N684 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.92■□□□□ 0.94
CPSF7Q8N684 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF7Q8N684 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF7Q8N684 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
CPSF7Q8N684 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CPSF7Q8N684 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CPSF7Q8N684 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
CPSF7Q8N684 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CPSF7Q8N684 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CPSF7Q8N684 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CPSF7Q8N684 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
CPSF7Q8N684 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
CPSF7Q8N684 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CPSF7Q8N684 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CPSF7Q8N684 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CPSF7Q8N684 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CPSF7Q8N684 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CPSF7Q8N684 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CPSF7Q8N684 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
CPSF7Q8N684 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.9■□□□□ 0.94
CPSF7Q8N684 SRD5A1P1-201ENST00000442297 786 ntBASIC20.9■□□□□ 0.94
CPSF7Q8N684 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.9■□□□□ 0.94
CPSF7Q8N684 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.9■□□□□ 0.94
CPSF7Q8N684 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CPSF7Q8N684 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CPSF7Q8N684 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CPSF7Q8N684 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CPSF7Q8N684 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.9■□□□□ 0.94
CPSF7Q8N684 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CPSF7Q8N684 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
CPSF7Q8N684 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CPSF7Q8N684 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CPSF7Q8N684 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CPSF7Q8N684 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
CPSF7Q8N684 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CPSF7Q8N684 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
CPSF7Q8N684 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CPSF7Q8N684 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CPSF7Q8N684 MIR935-201ENST00000401179 91 ntBASIC20.89■□□□□ 0.93
CPSF7Q8N684 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CPSF7Q8N684 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.89■□□□□ 0.93
CPSF7Q8N684 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CPSF7Q8N684 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CPSF7Q8N684 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CPSF7Q8N684 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CPSF7Q8N684 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
CPSF7Q8N684 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
CPSF7Q8N684 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.88■□□□□ 0.93
CPSF7Q8N684 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CPSF7Q8N684 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.88■□□□□ 0.93
CPSF7Q8N684 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.88■□□□□ 0.93
CPSF7Q8N684 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CPSF7Q8N684 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CPSF7Q8N684 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CPSF7Q8N684 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CPSF7Q8N684 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CPSF7Q8N684 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CPSF7Q8N684 AC005837.3-201ENST00000612163 286 ntBASIC20.88■□□□□ 0.93
CPSF7Q8N684 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.88■□□□□ 0.93
CPSF7Q8N684 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
CPSF7Q8N684 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.88■□□□□ 0.93
CPSF7Q8N684 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.88■□□□□ 0.93
CPSF7Q8N684 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms