Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 OCIAD1-205ENST00000444354 1756 ntTSL 3 BASIC15.03■□□□□ -05e-7■■■□□ 16.8
U2AF1Q01081 OCIAD1-203ENST00000396448 1306 ntTSL 1 (best) BASIC14.65□□□□□ -0.065e-7■■■□□ 16.8
U2AF1Q01081 OCIAD1-201ENST00000264312 1414 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.135e-7■■■□□ 16.8
U2AF1Q01081 OCIAD1-210ENST00000506801 571 ntTSL 2 BASIC12.25□□□□□ -0.455e-7■■■□□ 16.8
U2AF1Q01081 OCIAD1-225ENST00000512981 1209 ntTSL 412.24□□□□□ -0.455e-7■■■□□ 16.8
U2AF1Q01081 OCIAD1-209ENST00000505922 555 ntTSL 510.22□□□□□ -0.775e-7■■■□□ 16.8
U2AF1Q01081 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC8.23□□□□□ -1.095e-7■■■□□ 16.8
U2AF1Q01081 OCIAD1-207ENST00000503016 720 ntTSL 35.87□□□□□ -1.475e-7■■■□□ 16.8
U2AF1Q01081 DDX5-208ENST00000578491 463 ntTSL 27.82□□□□□ -1.165e-8■■■□□ 16.8
U2AF1Q01081 NUP214-223ENST00000530843 189 ntTSL 54.76□□□□□ -1.655e-12■■■□□ 16.8
U2AF1Q01081 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC18.9■□□□□ 0.622e-12■■■□□ 16.8
U2AF1Q01081 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC22.75■■□□□ 1.231e-6■■■□□ 16.8
U2AF1Q01081 CMC2-222ENST00000570086 801 ntTSL 320.96■□□□□ 0.951e-6■■■□□ 16.8
U2AF1Q01081 CMC2-214ENST00000565925 640 ntTSL 5 BASIC20.96■□□□□ 0.951e-6■■■□□ 16.8
U2AF1Q01081 CMC2-209ENST00000565108 399 ntTSL 2 BASIC18.88■□□□□ 0.611e-6■■■□□ 16.8
U2AF1Q01081 CMC2-204ENST00000562713 573 ntTSL 3 BASIC18.88■□□□□ 0.611e-6■■■□□ 16.8
U2AF1Q01081 CMC2-220ENST00000569187 612 ntTSL 218.88■□□□□ 0.611e-6■■■□□ 16.8
U2AF1Q01081 CMC2-211ENST00000565613 663 ntTSL 518.87■□□□□ 0.611e-6■■■□□ 16.8
U2AF1Q01081 CMC2-224ENST00000630396 481 ntTSL 5 BASIC18.87■□□□□ 0.611e-6■■■□□ 16.8
U2AF1Q01081 CMC2-205ENST00000562828 438 ntTSL 218.87■□□□□ 0.611e-6■■■□□ 16.8
U2AF1Q01081 CMC2-210ENST00000565514 262 ntTSL 318.54■□□□□ 0.561e-6■■■□□ 16.8
U2AF1Q01081 CMC2-202ENST00000486645 766 ntTSL 3 BASIC17.08■□□□□ 0.321e-6■■■□□ 16.8
U2AF1Q01081 CMC2-219ENST00000568228 825 ntTSL 315.91■□□□□ 0.141e-6■■■□□ 16.8
U2AF1Q01081 CMC2-223ENST00000570195 871 ntTSL 3 BASIC14.71□□□□□ -0.051e-6■■■□□ 16.8
U2AF1Q01081 CMC2-218ENST00000567593 919 ntTSL 314.71□□□□□ -0.051e-6■■■□□ 16.8
U2AF1Q01081 CMC2-201ENST00000219400 10301 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.121e-6■■■□□ 16.8
U2AF1Q01081 CMC2-207ENST00000564174 424 ntTSL 3 BASIC13.39□□□□□ -0.271e-6■■■□□ 16.8
U2AF1Q01081 CMC2-213ENST00000565914 528 ntAPPRIS P1 TSL 3 BASIC10.23□□□□□ -0.771e-6■■■□□ 16.8
U2AF1Q01081 CMC2-206ENST00000563779 2087 ntTSL 1 (best)7.74□□□□□ -1.171e-6■■■□□ 16.8
U2AF1Q01081 CMC2-217ENST00000566918 605 ntTSL 37.1□□□□□ -1.271e-6■■■□□ 16.8
U2AF1Q01081 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.361e-6■■■□□ 16.8
U2AF1Q01081 CMC2-221ENST00000569666 545 ntTSL 26.11□□□□□ -1.431e-6■■■□□ 16.8
U2AF1Q01081 CMC2-203ENST00000561614 683 ntTSL 35.4□□□□□ -1.541e-6■■■□□ 16.8
U2AF1Q01081 CMC2-216ENST00000566231 652 ntTSL 34.33□□□□□ -1.721e-6■■■□□ 16.8
U2AF1Q01081 CMC2-215ENST00000566047 660 ntTSL 23.87□□□□□ -1.791e-6■■■□□ 16.8
U2AF1Q01081 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.572e-11■■■□□ 16.7
U2AF1Q01081 NOP58-207ENST00000478941 508 ntTSL 37.95□□□□□ -1.142e-11■■■□□ 16.7
U2AF1Q01081 NOP58-203ENST00000433543 714 ntTSL 36.15□□□□□ -1.422e-11■■■□□ 16.7
U2AF1Q01081 NOP58-209ENST00000492688 571 ntTSL 45.38□□□□□ -1.552e-11■■■□□ 16.7
U2AF1Q01081 UTRN-210ENST00000460618 347 ntTSL 513.97□□□□□ -0.177e-15■■■□□ 16.7
U2AF1Q01081 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC20.7■□□□□ 0.96e-10■■■□□ 16.7
U2AF1Q01081 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC19.71■□□□□ 0.756e-10■■■□□ 16.7
U2AF1Q01081 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.476e-10■■■□□ 16.7
U2AF1Q01081 MBNL1-212ENST00000464596 989 ntTSL 511.66□□□□□ -0.546e-10■■■□□ 16.7
U2AF1Q01081 MBNL1-213ENST00000465907 945 ntTSL 1 (best) BASIC9.52□□□□□ -0.896e-10■■■□□ 16.7
U2AF1Q01081 MBNL1-216ENST00000478535 1451 ntTSL 1 (best)9.47□□□□□ -0.896e-10■■■□□ 16.7
U2AF1Q01081 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC8.85□□□□□ -0.996e-10■■■□□ 16.7
U2AF1Q01081 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC8.85□□□□□ -0.996e-10■■■□□ 16.7
U2AF1Q01081 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC8.02□□□□□ -1.136e-10■■■□□ 16.7
U2AF1Q01081 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC6.34□□□□□ -1.396e-10■■■□□ 16.7
U2AF1Q01081 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.71□□□□□ -1.666e-10■■■□□ 16.7
U2AF1Q01081 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.64□□□□□ -1.676e-10■■■□□ 16.7
U2AF1Q01081 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.6□□□□□ -1.676e-10■■■□□ 16.7
U2AF1Q01081 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC4.48□□□□□ -1.696e-10■■■□□ 16.7
U2AF1Q01081 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC4.48□□□□□ -1.696e-10■■■□□ 16.7
U2AF1Q01081 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.29□□□□□ -1.726e-10■■■□□ 16.7
U2AF1Q01081 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC6.84□□□□□ -1.325e-8■■■□□ 16.7
U2AF1Q01081 MIR34AHG-202ENST00000635405 529 ntTSL 426.4■■□□□ 1.823e-9■■■□□ 16.7
U2AF1Q01081 MIR34AHG-201ENST00000437157 409 ntTSL 525.29■■□□□ 1.643e-9■■■□□ 16.7
U2AF1Q01081 TRPM7-207ENST00000560955 7218 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.382e-7■■■□□ 16.7
U2AF1Q01081 TRPM7-209ENST00000561443 1193 ntTSL 210.21□□□□□ -0.772e-7■■■□□ 16.7
U2AF1Q01081 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC8.49□□□□□ -1.052e-7■■■□□ 16.7
U2AF1Q01081 TRPM7-202ENST00000558444 465 ntTSL 35.38□□□□□ -1.552e-7■■■□□ 16.7
U2AF1Q01081 TRPM7-206ENST00000560849 624 ntTSL 34.67□□□□□ -1.662e-7■■■□□ 16.7
U2AF1Q01081 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC28.12■■■□□ 2.097e-9■■■□□ 16.7
U2AF1Q01081 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.577e-9■■■□□ 16.7
U2AF1Q01081 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC22.99■■□□□ 1.277e-9■■■□□ 16.7
U2AF1Q01081 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.847e-9■■■□□ 16.7
U2AF1Q01081 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.682e-10■■■□□ 16.7
U2AF1Q01081 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.582e-10■■■□□ 16.7
U2AF1Q01081 LINC00969-313ENST00000628917 490 ntTSL 518.56■□□□□ 0.565e-7■■■□□ 16.7
U2AF1Q01081 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC18.56■□□□□ 0.565e-7■■■□□ 16.7
U2AF1Q01081 LINC00969-244ENST00000602127 749 ntTSL 518.56■□□□□ 0.565e-7■■■□□ 16.7
U2AF1Q01081 LINC00969-217ENST00000451982 1161 ntTSL 518.3■□□□□ 0.525e-7■■■□□ 16.7
U2AF1Q01081 LINC00969-231ENST00000597482 1476 ntTSL 5 BASIC18.26■□□□□ 0.515e-7■■■□□ 16.7
U2AF1Q01081 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC18.18■□□□□ 0.52e-10■■■□□ 16.7
U2AF1Q01081 MSH5-206ENST00000423982 2706 ntTSL 518.11■□□□□ 0.492e-10■■■□□ 16.7
U2AF1Q01081 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC17.96■□□□□ 0.475e-7■■■□□ 16.7
U2AF1Q01081 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC17.91■□□□□ 0.467e-9■■■□□ 16.7
U2AF1Q01081 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC17.83■□□□□ 0.457e-9■■■□□ 16.7
U2AF1Q01081 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC17.69■□□□□ 0.427e-9■■■□□ 16.7
U2AF1Q01081 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC17.35■□□□□ 0.375e-7■■■□□ 16.7
U2AF1Q01081 CLCN7-205ENST00000563642 4184 ntTSL 217.23■□□□□ 0.357e-9■■■□□ 16.7
U2AF1Q01081 LINC00969-285ENST00000627152 846 ntTSL 517.17■□□□□ 0.345e-7■■■□□ 16.7
U2AF1Q01081 LINC00969-263ENST00000626007 839 ntTSL 5 BASIC16.72■□□□□ 0.275e-7■■■□□ 16.7
U2AF1Q01081 MSH5-204ENST00000375755 3094 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.212e-10■■■□□ 16.7
U2AF1Q01081 LINC00969-320ENST00000629823 869 ntTSL 516.17■□□□□ 0.185e-7■■■□□ 16.7
U2AF1Q01081 LINC00969-236ENST00000599448 780 ntTSL 515.95■□□□□ 0.145e-7■■■□□ 16.7
U2AF1Q01081 LINC00969-342ENST00000631366 751 ntTSL 515.95■□□□□ 0.145e-7■■■□□ 16.7
U2AF1Q01081 LINC00969-336ENST00000631189 1156 ntTSL 515.91■□□□□ 0.145e-7■■■□□ 16.7
U2AF1Q01081 NGLY1-214ENST00000493324 3058 ntTSL 215.79■□□□□ 0.127e-9■■■□□ 16.7
U2AF1Q01081 LINC00969-296ENST00000627718 510 ntTSL 515.08■□□□□ 05e-7■■■□□ 16.7
U2AF1Q01081 LINC00969-204ENST00000420851 868 ntTSL 5 BASIC15.08■□□□□ 05e-7■■■□□ 16.7
U2AF1Q01081 LINC00969-331ENST00000630863 954 ntTSL 514.86□□□□□ -0.035e-7■■■□□ 16.7
U2AF1Q01081 LINC00969-230ENST00000597034 731 ntTSL 514.14□□□□□ -0.155e-7■■■□□ 16.7
U2AF1Q01081 LINC00969-272ENST00000626569 857 ntTSL 5 BASIC14.11□□□□□ -0.155e-7■■■□□ 16.7
U2AF1Q01081 LINC00969-225ENST00000594715 729 ntTSL 513.73□□□□□ -0.215e-7■■■□□ 16.7
U2AF1Q01081 MSH5-211ENST00000463144 2296 ntTSL 513.36□□□□□ -0.272e-10■■■□□ 16.7
U2AF1Q01081 LINC00969-216ENST00000451228 604 ntTSL 313.04□□□□□ -0.325e-7■■■□□ 16.7
U2AF1Q01081 LINC00969-274ENST00000626617 1014 ntTSL 512.11□□□□□ -0.475e-7■■■□□ 16.7
Retrieved 100 of 10,096 protein–RNA pairs in 53 ms