Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLRN1P58418 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLRN1P58418 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.17■□□□□ 0.66
CLRN1P58418 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLRN1P58418 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLRN1P58418 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLRN1P58418 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLRN1P58418 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC19.17■□□□□ 0.66
CLRN1P58418 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.17■□□□□ 0.66
CLRN1P58418 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.17■□□□□ 0.66
CLRN1P58418 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
CLRN1P58418 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLRN1P58418 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.17■□□□□ 0.66
CLRN1P58418 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLRN1P58418 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLRN1P58418 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLRN1P58418 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLRN1P58418 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLRN1P58418 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLRN1P58418 FBXW4P1-201ENST00000426721 2239 ntBASIC19.16■□□□□ 0.66
CLRN1P58418 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLRN1P58418 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.16■□□□□ 0.66
CLRN1P58418 FAM99A-202ENST00000538190 1989 ntBASIC19.16■□□□□ 0.66
CLRN1P58418 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.16■□□□□ 0.66
CLRN1P58418 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLRN1P58418 AC110285.6-201ENST00000617652 491 ntBASIC19.16■□□□□ 0.66
CLRN1P58418 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.16■□□□□ 0.66
CLRN1P58418 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLRN1P58418 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC19.16■□□□□ 0.66
CLRN1P58418 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLRN1P58418 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLRN1P58418 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLRN1P58418 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLRN1P58418 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CLRN1P58418 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLRN1P58418 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.15■□□□□ 0.66
CLRN1P58418 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CLRN1P58418 EDA-201ENST00000338901 1233 ntBASIC19.15■□□□□ 0.66
CLRN1P58418 AC099791.1-201ENST00000416440 715 ntBASIC19.15■□□□□ 0.66
CLRN1P58418 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC19.15■□□□□ 0.66
CLRN1P58418 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.15■□□□□ 0.66
CLRN1P58418 AC027682.1-201ENST00000562846 899 ntBASIC19.15■□□□□ 0.66
CLRN1P58418 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.15■□□□□ 0.66
CLRN1P58418 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
CLRN1P58418 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLRN1P58418 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLRN1P58418 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLRN1P58418 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLRN1P58418 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.15■□□□□ 0.66
CLRN1P58418 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLRN1P58418 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.15■□□□□ 0.66
CLRN1P58418 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CLRN1P58418 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
CLRN1P58418 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.66
CLRN1P58418 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLRN1P58418 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLRN1P58418 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC19.14■□□□□ 0.65
CLRN1P58418 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
CLRN1P58418 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.14■□□□□ 0.65
CLRN1P58418 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.14■□□□□ 0.65
CLRN1P58418 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
CLRN1P58418 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.14■□□□□ 0.65
CLRN1P58418 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
CLRN1P58418 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLRN1P58418 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLRN1P58418 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
CLRN1P58418 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLRN1P58418 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLRN1P58418 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLRN1P58418 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLRN1P58418 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLRN1P58418 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.13■□□□□ 0.65
CLRN1P58418 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.13■□□□□ 0.65
CLRN1P58418 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC19.13■□□□□ 0.65
CLRN1P58418 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLRN1P58418 AL355001.2-201ENST00000620617 1191 ntBASIC19.13■□□□□ 0.65
CLRN1P58418 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLRN1P58418 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLRN1P58418 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLRN1P58418 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLRN1P58418 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLRN1P58418 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CLRN1P58418 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.12■□□□□ 0.65
CLRN1P58418 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLRN1P58418 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.12■□□□□ 0.65
CLRN1P58418 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLRN1P58418 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
CLRN1P58418 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLRN1P58418 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLRN1P58418 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.12■□□□□ 0.65
CLRN1P58418 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.12■□□□□ 0.65
CLRN1P58418 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLRN1P58418 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLRN1P58418 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLRN1P58418 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.12■□□□□ 0.65
CLRN1P58418 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.12■□□□□ 0.65
CLRN1P58418 IGHV3-19-201ENST00000521488 291 ntBASIC19.12■□□□□ 0.65
CLRN1P58418 AL034346.1-201ENST00000568244 1277 ntBASIC19.12■□□□□ 0.65
CLRN1P58418 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CLRN1P58418 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms