Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.74■■□□□ 1.07
TNFRSF4P43489 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TNFRSF4P43489 AP006587.3-201ENST00000525742 1516 ntBASIC21.74■■□□□ 1.07
TNFRSF4P43489 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
TNFRSF4P43489 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TNFRSF4P43489 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
TNFRSF4P43489 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TNFRSF4P43489 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
TNFRSF4P43489 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TNFRSF4P43489 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.73■■□□□ 1.07
TNFRSF4P43489 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TNFRSF4P43489 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.73■■□□□ 1.07
TNFRSF4P43489 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
TNFRSF4P43489 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TNFRSF4P43489 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.73■■□□□ 1.07
TNFRSF4P43489 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.72■■□□□ 1.07
TNFRSF4P43489 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.72■■□□□ 1.07
TNFRSF4P43489 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TNFRSF4P43489 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TNFRSF4P43489 SLC29A4P1-201ENST00000398760 971 ntBASIC21.72■■□□□ 1.07
TNFRSF4P43489 GUSBP6-202ENST00000438529 1198 ntBASIC21.72■■□□□ 1.07
TNFRSF4P43489 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
TNFRSF4P43489 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.72■■□□□ 1.07
TNFRSF4P43489 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TNFRSF4P43489 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TNFRSF4P43489 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
TNFRSF4P43489 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TNFRSF4P43489 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
TNFRSF4P43489 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
TNFRSF4P43489 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
TNFRSF4P43489 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
TNFRSF4P43489 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.71■■□□□ 1.07
TNFRSF4P43489 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.71■■□□□ 1.07
TNFRSF4P43489 AC133552.2-202ENST00000575694 574 ntBASIC21.71■■□□□ 1.07
TNFRSF4P43489 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.71■■□□□ 1.07
TNFRSF4P43489 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.71■■□□□ 1.07
TNFRSF4P43489 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
TNFRSF4P43489 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.71■■□□□ 1.07
TNFRSF4P43489 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
TNFRSF4P43489 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TNFRSF4P43489 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.7■■□□□ 1.06
TNFRSF4P43489 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.7■■□□□ 1.06
TNFRSF4P43489 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
TNFRSF4P43489 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC21.7■■□□□ 1.06
TNFRSF4P43489 AF201337.1-201ENST00000520239 748 ntBASIC21.7■■□□□ 1.06
TNFRSF4P43489 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC21.7■■□□□ 1.06
TNFRSF4P43489 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
TNFRSF4P43489 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.7■■□□□ 1.06
TNFRSF4P43489 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.7■■□□□ 1.06
TNFRSF4P43489 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
TNFRSF4P43489 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
TNFRSF4P43489 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TNFRSF4P43489 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.7■■□□□ 1.06
TNFRSF4P43489 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.69■■□□□ 1.06
TNFRSF4P43489 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TNFRSF4P43489 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TNFRSF4P43489 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
TNFRSF4P43489 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.69■■□□□ 1.06
TNFRSF4P43489 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TNFRSF4P43489 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TNFRSF4P43489 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.69■■□□□ 1.06
TNFRSF4P43489 TERF1P5-201ENST00000477545 1207 ntBASIC21.69■■□□□ 1.06
TNFRSF4P43489 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
TNFRSF4P43489 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
TNFRSF4P43489 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21.69■■□□□ 1.06
TNFRSF4P43489 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.69■■□□□ 1.06
TNFRSF4P43489 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
TNFRSF4P43489 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.69■■□□□ 1.06
TNFRSF4P43489 AC013268.1-206ENST00000638368 961 ntBASIC21.69■■□□□ 1.06
TNFRSF4P43489 AC112229.1-201ENST00000639295 961 ntBASIC21.69■■□□□ 1.06
TNFRSF4P43489 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TNFRSF4P43489 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.69■■□□□ 1.06
TNFRSF4P43489 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TNFRSF4P43489 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TNFRSF4P43489 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.68■■□□□ 1.06
TNFRSF4P43489 ABHD17AP1-201ENST00000358206 933 ntBASIC21.68■■□□□ 1.06
TNFRSF4P43489 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.68■■□□□ 1.06
TNFRSF4P43489 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.68■■□□□ 1.06
TNFRSF4P43489 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21.68■■□□□ 1.06
TNFRSF4P43489 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.68■■□□□ 1.06
TNFRSF4P43489 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.68■■□□□ 1.06
TNFRSF4P43489 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TNFRSF4P43489 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.68■■□□□ 1.06
TNFRSF4P43489 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TNFRSF4P43489 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TNFRSF4P43489 AC137767.1-201ENST00000602918 1920 ntBASIC21.68■■□□□ 1.06
TNFRSF4P43489 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TNFRSF4P43489 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TNFRSF4P43489 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TNFRSF4P43489 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
TNFRSF4P43489 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
TNFRSF4P43489 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.67■■□□□ 1.06
TNFRSF4P43489 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TNFRSF4P43489 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
TNFRSF4P43489 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
TNFRSF4P43489 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TNFRSF4P43489 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.67■■□□□ 1.06
TNFRSF4P43489 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.67■■□□□ 1.06
TNFRSF4P43489 CD99P1-205ENST00000527459 561 ntBASIC21.67■■□□□ 1.06
TNFRSF4P43489 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms