Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
CIITAP33076 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC24.31■■□□□ 1.48
CIITAP33076 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC24.31■■□□□ 1.48
CIITAP33076 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
CIITAP33076 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC24.31■■□□□ 1.48
CIITAP33076 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CIITAP33076 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
CIITAP33076 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC24.31■■□□□ 1.48
CIITAP33076 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CIITAP33076 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CIITAP33076 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC24.31■■□□□ 1.48
CIITAP33076 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC24.3■■□□□ 1.48
CIITAP33076 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CIITAP33076 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CIITAP33076 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CIITAP33076 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CIITAP33076 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC24.3■■□□□ 1.48
CIITAP33076 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CIITAP33076 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC24.3■■□□□ 1.48
CIITAP33076 KRT18P61-201ENST00000585825 1298 ntBASIC24.3■■□□□ 1.48
CIITAP33076 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CIITAP33076 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC24.3■■□□□ 1.48
CIITAP33076 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC24.3■■□□□ 1.48
CIITAP33076 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
CIITAP33076 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CIITAP33076 AC133561.1-201ENST00000568600 2415 ntBASIC24.29■■□□□ 1.48
CIITAP33076 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CIITAP33076 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC24.29■■□□□ 1.48
CIITAP33076 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC24.29■■□□□ 1.48
CIITAP33076 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC24.29■■□□□ 1.48
CIITAP33076 ECEL1P1-201ENST00000373592 1742 ntBASIC24.29■■□□□ 1.48
CIITAP33076 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
CIITAP33076 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CIITAP33076 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CIITAP33076 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CIITAP33076 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CIITAP33076 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CIITAP33076 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
CIITAP33076 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CIITAP33076 NTF6G-201ENST00000591094 616 ntBASIC24.28■■□□□ 1.48
CIITAP33076 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC24.28■■□□□ 1.48
CIITAP33076 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CIITAP33076 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CIITAP33076 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CIITAP33076 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CIITAP33076 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
CIITAP33076 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CIITAP33076 AP004607.4-201ENST00000530158 1459 ntBASIC24.27■■□□□ 1.48
CIITAP33076 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
CIITAP33076 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
CIITAP33076 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC24.27■■□□□ 1.48
CIITAP33076 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CIITAP33076 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
CIITAP33076 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC24.27■■□□□ 1.48
CIITAP33076 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC24.27■■□□□ 1.48
CIITAP33076 AC079140.4-201ENST00000507448 529 ntBASIC24.27■■□□□ 1.48
CIITAP33076 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
CIITAP33076 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC24.27■■□□□ 1.48
CIITAP33076 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CIITAP33076 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
CIITAP33076 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CIITAP33076 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC24.26■■□□□ 1.47
CIITAP33076 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CIITAP33076 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC24.26■■□□□ 1.47
CIITAP33076 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC24.26■■□□□ 1.47
CIITAP33076 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CIITAP33076 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
CIITAP33076 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
CIITAP33076 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC24.25■■□□□ 1.47
CIITAP33076 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CIITAP33076 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
CIITAP33076 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC24.25■■□□□ 1.47
CIITAP33076 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC24.25■■□□□ 1.47
CIITAP33076 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CIITAP33076 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC24.25■■□□□ 1.47
CIITAP33076 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
CIITAP33076 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC24.25■■□□□ 1.47
CIITAP33076 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CIITAP33076 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC24.25■■□□□ 1.47
CIITAP33076 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC24.24■■□□□ 1.47
CIITAP33076 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
CIITAP33076 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
CIITAP33076 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC24.24■■□□□ 1.47
CIITAP33076 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC24.24■■□□□ 1.47
CIITAP33076 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC24.24■■□□□ 1.47
CIITAP33076 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CIITAP33076 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
CIITAP33076 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CIITAP33076 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
CIITAP33076 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
CIITAP33076 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CIITAP33076 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC24.23■■□□□ 1.47
CIITAP33076 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC24.23■■□□□ 1.47
CIITAP33076 COX20-201ENST00000366528 568 ntTSL 2 BASIC24.23■■□□□ 1.47
CIITAP33076 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC24.23■■□□□ 1.47
CIITAP33076 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC24.23■■□□□ 1.47
CIITAP33076 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC24.23■■□□□ 1.47
CIITAP33076 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC24.23■■□□□ 1.47
CIITAP33076 AC004854.2-201ENST00000608450 1441 ntBASIC24.23■■□□□ 1.47
CIITAP33076 MFF-207ENST00000409565 1548 ntTSL 2 BASIC24.23■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms