Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1BO60663 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1BO60663 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
LMX1BO60663 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1BO60663 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1BO60663 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1BO60663 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC18.84■□□□□ 0.61
LMX1BO60663 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1BO60663 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC18.84■□□□□ 0.61
LMX1BO60663 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.84■□□□□ 0.61
LMX1BO60663 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1BO60663 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1BO60663 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.84■□□□□ 0.61
LMX1BO60663 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1BO60663 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC18.84■□□□□ 0.61
LMX1BO60663 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1BO60663 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1BO60663 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
LMX1BO60663 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC18.84■□□□□ 0.61
LMX1BO60663 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1BO60663 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1BO60663 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC18.84■□□□□ 0.61
LMX1BO60663 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
LMX1BO60663 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1BO60663 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LMX1BO60663 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC18.83■□□□□ 0.61
LMX1BO60663 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
LMX1BO60663 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LMX1BO60663 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LMX1BO60663 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LMX1BO60663 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LMX1BO60663 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
LMX1BO60663 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC18.83■□□□□ 0.61
LMX1BO60663 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC18.83■□□□□ 0.61
LMX1BO60663 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LMX1BO60663 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC18.83■□□□□ 0.6
LMX1BO60663 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC18.83■□□□□ 0.6
LMX1BO60663 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LMX1BO60663 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LMX1BO60663 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LMX1BO60663 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LMX1BO60663 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.83■□□□□ 0.6
LMX1BO60663 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LMX1BO60663 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LMX1BO60663 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LMX1BO60663 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
LMX1BO60663 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LMX1BO60663 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
LMX1BO60663 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
LMX1BO60663 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LMX1BO60663 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LMX1BO60663 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LMX1BO60663 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LMX1BO60663 AC099791.1-201ENST00000416440 715 ntBASIC18.82■□□□□ 0.6
LMX1BO60663 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.82■□□□□ 0.6
LMX1BO60663 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LMX1BO60663 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC18.81■□□□□ 0.6
LMX1BO60663 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1BO60663 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC18.81■□□□□ 0.6
LMX1BO60663 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC18.81■□□□□ 0.6
LMX1BO60663 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC18.81■□□□□ 0.6
LMX1BO60663 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1BO60663 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.81■□□□□ 0.6
LMX1BO60663 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1BO60663 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
LMX1BO60663 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.81■□□□□ 0.6
LMX1BO60663 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1BO60663 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1BO60663 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
LMX1BO60663 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1BO60663 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1BO60663 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.8■□□□□ 0.6
LMX1BO60663 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
LMX1BO60663 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1BO60663 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1BO60663 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
LMX1BO60663 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1BO60663 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1BO60663 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
LMX1BO60663 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1BO60663 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1BO60663 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1BO60663 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1BO60663 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1BO60663 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1BO60663 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC18.8■□□□□ 0.6
LMX1BO60663 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1BO60663 AC005229.4-201ENST00000610085 2198 ntBASIC18.8■□□□□ 0.6
LMX1BO60663 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1BO60663 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1BO60663 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1BO60663 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1BO60663 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.8■□□□□ 0.6
LMX1BO60663 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
LMX1BO60663 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LMX1BO60663 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LMX1BO60663 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LMX1BO60663 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LMX1BO60663 HES6-206ENST00000409574 738 ntTSL 2 BASIC18.79■□□□□ 0.6
LMX1BO60663 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms