Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TCRBV7S3A2A0A539 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.87■■□□□ 1.09
TCRBV7S3A2A0A539 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.87■■□□□ 1.09
TCRBV7S3A2A0A539 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TCRBV7S3A2A0A539 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
TCRBV7S3A2A0A539 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
TCRBV7S3A2A0A539 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TCRBV7S3A2A0A539 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
TCRBV7S3A2A0A539 AC131281.2-201ENST00000520478 145 ntBASIC21.86■■□□□ 1.09
TCRBV7S3A2A0A539 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TCRBV7S3A2A0A539 AC092171.4-201ENST00000609130 632 ntBASIC21.86■■□□□ 1.09
TCRBV7S3A2A0A539 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.86■■□□□ 1.09
TCRBV7S3A2A0A539 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TCRBV7S3A2A0A539 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TCRBV7S3A2A0A539 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC21.86■■□□□ 1.09
TCRBV7S3A2A0A539 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TCRBV7S3A2A0A539 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.85■■□□□ 1.09
TCRBV7S3A2A0A539 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
TCRBV7S3A2A0A539 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC21.85■■□□□ 1.09
TCRBV7S3A2A0A539 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.85■■□□□ 1.09
TCRBV7S3A2A0A539 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
TCRBV7S3A2A0A539 SYT6-210ENST00000641643 1587 ntBASIC21.85■■□□□ 1.09
TCRBV7S3A2A0A539 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
TCRBV7S3A2A0A539 OXCT2P1-201ENST00000447263 1535 ntBASIC21.85■■□□□ 1.09
TCRBV7S3A2A0A539 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TCRBV7S3A2A0A539 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.84■■□□□ 1.09
TCRBV7S3A2A0A539 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TCRBV7S3A2A0A539 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TCRBV7S3A2A0A539 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TCRBV7S3A2A0A539 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TCRBV7S3A2A0A539 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
TCRBV7S3A2A0A539 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
TCRBV7S3A2A0A539 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TCRBV7S3A2A0A539 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TCRBV7S3A2A0A539 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.84■■□□□ 1.09
TCRBV7S3A2A0A539 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.84■■□□□ 1.09
TCRBV7S3A2A0A539 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
TCRBV7S3A2A0A539 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.84■■□□□ 1.09
TCRBV7S3A2A0A539 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.84■■□□□ 1.09
TCRBV7S3A2A0A539 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TCRBV7S3A2A0A539 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.83■■□□□ 1.09
TCRBV7S3A2A0A539 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TCRBV7S3A2A0A539 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.83■■□□□ 1.09
TCRBV7S3A2A0A539 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TCRBV7S3A2A0A539 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
TCRBV7S3A2A0A539 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TCRBV7S3A2A0A539 SLC47A1P1-202ENST00000449666 945 ntBASIC21.83■■□□□ 1.09
TCRBV7S3A2A0A539 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.83■■□□□ 1.09
TCRBV7S3A2A0A539 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.83■■□□□ 1.09
TCRBV7S3A2A0A539 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.83■■□□□ 1.09
TCRBV7S3A2A0A539 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.83■■□□□ 1.09
TCRBV7S3A2A0A539 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TCRBV7S3A2A0A539 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.83■■□□□ 1.09
TCRBV7S3A2A0A539 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TCRBV7S3A2A0A539 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
TCRBV7S3A2A0A539 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TCRBV7S3A2A0A539 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.82■■□□□ 1.08
TCRBV7S3A2A0A539 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TCRBV7S3A2A0A539 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TCRBV7S3A2A0A539 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
TCRBV7S3A2A0A539 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TCRBV7S3A2A0A539 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
TCRBV7S3A2A0A539 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TCRBV7S3A2A0A539 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TCRBV7S3A2A0A539 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TCRBV7S3A2A0A539 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TCRBV7S3A2A0A539 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.82■■□□□ 1.08
TCRBV7S3A2A0A539 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TCRBV7S3A2A0A539 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TCRBV7S3A2A0A539 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
TCRBV7S3A2A0A539 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.81■■□□□ 1.08
TCRBV7S3A2A0A539 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
TCRBV7S3A2A0A539 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TCRBV7S3A2A0A539 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
TCRBV7S3A2A0A539 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TCRBV7S3A2A0A539 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
TCRBV7S3A2A0A539 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
TCRBV7S3A2A0A539 AL138724.1-201ENST00000606771 1088 ntBASIC21.81■■□□□ 1.08
TCRBV7S3A2A0A539 AC087239.1-201ENST00000622671 572 ntBASIC21.81■■□□□ 1.08
TCRBV7S3A2A0A539 AC136469.2-201ENST00000623944 1028 ntBASIC21.81■■□□□ 1.08
TCRBV7S3A2A0A539 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TCRBV7S3A2A0A539 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.81■■□□□ 1.08
TCRBV7S3A2A0A539 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.81■■□□□ 1.08
TCRBV7S3A2A0A539 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TCRBV7S3A2A0A539 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TCRBV7S3A2A0A539 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TCRBV7S3A2A0A539 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.8■■□□□ 1.08
TCRBV7S3A2A0A539 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.8■■□□□ 1.08
TCRBV7S3A2A0A539 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
TCRBV7S3A2A0A539 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
TCRBV7S3A2A0A539 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
TCRBV7S3A2A0A539 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.8■■□□□ 1.08
TCRBV7S3A2A0A539 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.8■■□□□ 1.08
TCRBV7S3A2A0A539 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TCRBV7S3A2A0A539 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TCRBV7S3A2A0A539 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.8■■□□□ 1.08
TCRBV7S3A2A0A539 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.8■■□□□ 1.08
TCRBV7S3A2A0A539 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.8■■□□□ 1.08
TCRBV7S3A2A0A539 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TCRBV7S3A2A0A539 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms