Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC28.9■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC28.9■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC28.9■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 CBFB-203ENST00000561924 584 ntTSL 5 BASIC28.9■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 VPS53-216ENST00000574029 585 ntTSL 4 BASIC28.9■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC28.9■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC28.9■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC28.9■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC28.9■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC28.9■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC28.89■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC28.89■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC28.89■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC28.89■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 IRS3P-201ENST00000223076 1006 ntBASIC28.89■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC28.89■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC28.89■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC28.89■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC28.89■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC28.89■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC28.89■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC28.89■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC28.88■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC28.88■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC28.88■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC28.88■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC28.87■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC28.87■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 MAG-206ENST00000597035 542 ntTSL 4 BASIC28.87■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 AC092053.2-201ENST00000640557 1818 ntBASIC28.87■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC28.86■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC28.86■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 AC136469.2-201ENST00000623944 1028 ntBASIC28.86■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC28.86■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC28.86■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC28.86■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC28.85■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC28.85■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC28.85■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 AC008764.7-201ENST00000593779 1081 ntBASIC28.85■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 CA15P2-201ENST00000611168 834 ntBASIC28.85■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 AL031602.1-201ENST00000633169 911 ntBASIC28.85■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC28.85■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 C11orf96-202ENST00000528572 1834 ntBASIC28.85■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC28.84■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 USP45-205ENST00000472914 1617 ntTSL 5 BASIC28.84■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 HACD1-201ENST00000326961 773 ntTSL 2 BASIC28.84■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 SP2-202ENST00000613139 908 ntTSL 5 BASIC28.84■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 USP48-205ENST00000421625 2818 ntTSL 2 BASIC28.84■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC28.84■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC28.84■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC28.84■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC28.83■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC28.83■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC28.83■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC28.83■■■□□ 2.21
SENP3-EIF4A1A0A087X0R7 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC28.82■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC28.82■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC28.82■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC28.82■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC28.82■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC28.81■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC28.81■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC28.81■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC28.81■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 AC092171.4-201ENST00000609130 632 ntBASIC28.81■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC28.81■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC28.8■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC28.8■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC28.8■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC28.8■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC28.8■■■□□ 2.2
SENP3-EIF4A1A0A087X0R7 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms