Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
VSX1Q9NZR4 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.22■□□□□ 0.67
VSX1Q9NZR4 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC19.22■□□□□ 0.67
VSX1Q9NZR4 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC19.22■□□□□ 0.67
VSX1Q9NZR4 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VSX1Q9NZR4 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.22■□□□□ 0.67
VSX1Q9NZR4 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.22■□□□□ 0.67
VSX1Q9NZR4 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
VSX1Q9NZR4 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VSX1Q9NZR4 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
VSX1Q9NZR4 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VSX1Q9NZR4 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
VSX1Q9NZR4 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
VSX1Q9NZR4 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
VSX1Q9NZR4 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VSX1Q9NZR4 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VSX1Q9NZR4 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VSX1Q9NZR4 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VSX1Q9NZR4 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
VSX1Q9NZR4 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
VSX1Q9NZR4 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.21■□□□□ 0.67
VSX1Q9NZR4 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VSX1Q9NZR4 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.21■□□□□ 0.67
VSX1Q9NZR4 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC19.21■□□□□ 0.67
VSX1Q9NZR4 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VSX1Q9NZR4 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.2■□□□□ 0.66
VSX1Q9NZR4 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VSX1Q9NZR4 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VSX1Q9NZR4 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.2■□□□□ 0.66
VSX1Q9NZR4 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.2■□□□□ 0.66
VSX1Q9NZR4 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.2■□□□□ 0.66
VSX1Q9NZR4 OXCT2P1-201ENST00000447263 1535 ntBASIC19.2■□□□□ 0.66
VSX1Q9NZR4 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
VSX1Q9NZR4 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
VSX1Q9NZR4 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
VSX1Q9NZR4 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
VSX1Q9NZR4 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VSX1Q9NZR4 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VSX1Q9NZR4 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VSX1Q9NZR4 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
VSX1Q9NZR4 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VSX1Q9NZR4 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
VSX1Q9NZR4 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.19■□□□□ 0.66
VSX1Q9NZR4 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.19■□□□□ 0.66
VSX1Q9NZR4 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.19■□□□□ 0.66
VSX1Q9NZR4 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VSX1Q9NZR4 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.19■□□□□ 0.66
VSX1Q9NZR4 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VSX1Q9NZR4 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VSX1Q9NZR4 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VSX1Q9NZR4 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
VSX1Q9NZR4 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VSX1Q9NZR4 AC244015.2-201ENST00000616358 1861 ntBASIC19.18■□□□□ 0.66
VSX1Q9NZR4 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VSX1Q9NZR4 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VSX1Q9NZR4 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
VSX1Q9NZR4 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VSX1Q9NZR4 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
VSX1Q9NZR4 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
VSX1Q9NZR4 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
VSX1Q9NZR4 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VSX1Q9NZR4 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
VSX1Q9NZR4 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VSX1Q9NZR4 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VSX1Q9NZR4 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VSX1Q9NZR4 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
VSX1Q9NZR4 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.18■□□□□ 0.66
VSX1Q9NZR4 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VSX1Q9NZR4 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VSX1Q9NZR4 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VSX1Q9NZR4 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VSX1Q9NZR4 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
VSX1Q9NZR4 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VSX1Q9NZR4 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC19.17■□□□□ 0.66
VSX1Q9NZR4 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VSX1Q9NZR4 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VSX1Q9NZR4 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VSX1Q9NZR4 AP005435.1-201ENST00000529293 1178 ntBASIC19.17■□□□□ 0.66
VSX1Q9NZR4 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.17■□□□□ 0.66
VSX1Q9NZR4 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.17■□□□□ 0.66
VSX1Q9NZR4 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
VSX1Q9NZR4 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VSX1Q9NZR4 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.17■□□□□ 0.66
VSX1Q9NZR4 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.17■□□□□ 0.66
VSX1Q9NZR4 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.16■□□□□ 0.66
VSX1Q9NZR4 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
VSX1Q9NZR4 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VSX1Q9NZR4 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
VSX1Q9NZR4 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VSX1Q9NZR4 SLC47A1P1-202ENST00000449666 945 ntBASIC19.16■□□□□ 0.66
VSX1Q9NZR4 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.16■□□□□ 0.66
VSX1Q9NZR4 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VSX1Q9NZR4 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.16■□□□□ 0.66
VSX1Q9NZR4 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.16■□□□□ 0.66
VSX1Q9NZR4 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.16■□□□□ 0.66
VSX1Q9NZR4 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VSX1Q9NZR4 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VSX1Q9NZR4 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
VSX1Q9NZR4 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.16■□□□□ 0.66
VSX1Q9NZR4 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms