Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 KRT125P-201ENST00000546827 989 ntBASIC21.31■■□□□ 1
MKS1Q9NXB0 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.31■■□□□ 1
MKS1Q9NXB0 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
MKS1Q9NXB0 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.31■■□□□ 1
MKS1Q9NXB0 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
MKS1Q9NXB0 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MKS1Q9NXB0 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.31■■□□□ 1
MKS1Q9NXB0 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
MKS1Q9NXB0 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.31■■□□□ 1
MKS1Q9NXB0 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.3■■□□□ 1
MKS1Q9NXB0 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
MKS1Q9NXB0 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.3■■□□□ 1
MKS1Q9NXB0 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.3■■□□□ 1
MKS1Q9NXB0 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.3■■□□□ 1
MKS1Q9NXB0 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.3■■□□□ 1
MKS1Q9NXB0 AC241377.3-202ENST00000626088 1088 ntBASIC21.3■■□□□ 1
MKS1Q9NXB0 AC241585.3-202ENST00000628937 1088 ntBASIC21.3■■□□□ 1
MKS1Q9NXB0 AC245100.8-202ENST00000629247 1058 ntBASIC21.3■■□□□ 1
MKS1Q9NXB0 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MKS1Q9NXB0 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
MKS1Q9NXB0 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MKS1Q9NXB0 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MKS1Q9NXB0 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.3■■□□□ 1
MKS1Q9NXB0 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.29■■□□□ 1
MKS1Q9NXB0 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
MKS1Q9NXB0 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MKS1Q9NXB0 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
MKS1Q9NXB0 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MKS1Q9NXB0 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.29■■□□□ 1
MKS1Q9NXB0 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
MKS1Q9NXB0 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.29■■□□□ 1
MKS1Q9NXB0 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
MKS1Q9NXB0 AC133637.1-201ENST00000624115 1537 ntBASIC21.29■■□□□ 1
MKS1Q9NXB0 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.28■■□□□ 1
MKS1Q9NXB0 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MKS1Q9NXB0 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MKS1Q9NXB0 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
MKS1Q9NXB0 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
MKS1Q9NXB0 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MKS1Q9NXB0 AL451085.2-201ENST00000605085 799 ntBASIC21.28■■□□□ 1
MKS1Q9NXB0 AC010997.5-201ENST00000609182 354 ntBASIC21.28■■□□□ 1
MKS1Q9NXB0 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
MKS1Q9NXB0 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
MKS1Q9NXB0 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.28■■□□□ 1
MKS1Q9NXB0 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MKS1Q9NXB0 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.27■■□□□ 1
MKS1Q9NXB0 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.27■■□□□ 1
MKS1Q9NXB0 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.27■■□□□ 1
MKS1Q9NXB0 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
MKS1Q9NXB0 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.27■■□□□ 1
MKS1Q9NXB0 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.27■■□□□ 1
MKS1Q9NXB0 AC068587.7-201ENST00000641602 218 ntBASIC21.27■■□□□ 1
MKS1Q9NXB0 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.27■■□□□ 1
MKS1Q9NXB0 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.27■■□□□ 1
MKS1Q9NXB0 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.27■■□□□ 1
MKS1Q9NXB0 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MKS1Q9NXB0 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.27■□□□□ 0.99
MKS1Q9NXB0 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
MKS1Q9NXB0 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.26■□□□□ 0.99
MKS1Q9NXB0 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MKS1Q9NXB0 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MKS1Q9NXB0 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.26■□□□□ 0.99
MKS1Q9NXB0 MIR4787-201ENST00000607364 84 ntBASIC21.26■□□□□ 0.99
MKS1Q9NXB0 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
MKS1Q9NXB0 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MKS1Q9NXB0 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
MKS1Q9NXB0 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MKS1Q9NXB0 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MKS1Q9NXB0 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MKS1Q9NXB0 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
MKS1Q9NXB0 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MKS1Q9NXB0 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MKS1Q9NXB0 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
MKS1Q9NXB0 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
MKS1Q9NXB0 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.25■□□□□ 0.99
MKS1Q9NXB0 AL117332.1-201ENST00000622628 974 ntBASIC21.25■□□□□ 0.99
MKS1Q9NXB0 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MKS1Q9NXB0 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MKS1Q9NXB0 AL157384.1-201ENST00000445995 2473 ntBASIC21.24■□□□□ 0.99
MKS1Q9NXB0 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
MKS1Q9NXB0 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MKS1Q9NXB0 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
MKS1Q9NXB0 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
MKS1Q9NXB0 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.24■□□□□ 0.99
MKS1Q9NXB0 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.24■□□□□ 0.99
MKS1Q9NXB0 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
MKS1Q9NXB0 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.24■□□□□ 0.99
MKS1Q9NXB0 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
MKS1Q9NXB0 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MKS1Q9NXB0 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
MKS1Q9NXB0 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
MKS1Q9NXB0 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
MKS1Q9NXB0 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MKS1Q9NXB0 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
MKS1Q9NXB0 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.23■□□□□ 0.99
MKS1Q9NXB0 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.23■□□□□ 0.99
MKS1Q9NXB0 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MKS1Q9NXB0 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MKS1Q9NXB0 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
MKS1Q9NXB0 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms