Protein–RNA interactions for Protein: Q9NQ40

SLC52A3, Solute carrier family 52, riboflavin transporter, member 3, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC52A3Q9NQ40 AC239859.2-201ENST00000444165 318 ntBASIC20.46■□□□□ 0.87
SLC52A3Q9NQ40 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC52A3Q9NQ40 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC52A3Q9NQ40 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
SLC52A3Q9NQ40 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC52A3Q9NQ40 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
SLC52A3Q9NQ40 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SLC52A3Q9NQ40 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
SLC52A3Q9NQ40 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.45■□□□□ 0.86
SLC52A3Q9NQ40 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.45■□□□□ 0.86
SLC52A3Q9NQ40 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.45■□□□□ 0.86
SLC52A3Q9NQ40 AC241377.3-202ENST00000626088 1088 ntBASIC20.45■□□□□ 0.86
SLC52A3Q9NQ40 AC241585.3-202ENST00000628937 1088 ntBASIC20.45■□□□□ 0.86
SLC52A3Q9NQ40 AC245100.8-202ENST00000629247 1058 ntBASIC20.45■□□□□ 0.86
SLC52A3Q9NQ40 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SLC52A3Q9NQ40 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SLC52A3Q9NQ40 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SLC52A3Q9NQ40 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SLC52A3Q9NQ40 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC52A3Q9NQ40 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.44■□□□□ 0.86
SLC52A3Q9NQ40 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC52A3Q9NQ40 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
SLC52A3Q9NQ40 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.44■□□□□ 0.86
SLC52A3Q9NQ40 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC52A3Q9NQ40 AL117332.1-201ENST00000622628 974 ntBASIC20.44■□□□□ 0.86
SLC52A3Q9NQ40 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC52A3Q9NQ40 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC52A3Q9NQ40 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SLC52A3Q9NQ40 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC52A3Q9NQ40 OR7E47P-201ENST00000546390 1422 ntBASIC20.44■□□□□ 0.86
SLC52A3Q9NQ40 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC52A3Q9NQ40 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
SLC52A3Q9NQ40 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
SLC52A3Q9NQ40 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SLC52A3Q9NQ40 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.43■□□□□ 0.86
SLC52A3Q9NQ40 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SLC52A3Q9NQ40 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SLC52A3Q9NQ40 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC52A3Q9NQ40 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.42■□□□□ 0.86
SLC52A3Q9NQ40 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
SLC52A3Q9NQ40 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.42■□□□□ 0.86
SLC52A3Q9NQ40 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC52A3Q9NQ40 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SLC52A3Q9NQ40 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.42■□□□□ 0.86
SLC52A3Q9NQ40 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC52A3Q9NQ40 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC52A3Q9NQ40 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SLC52A3Q9NQ40 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC52A3Q9NQ40 TSPY9P-201ENST00000440215 945 ntBASIC20.42■□□□□ 0.86
SLC52A3Q9NQ40 TSPY11P-201ENST00000442607 1045 ntBASIC20.42■□□□□ 0.86
SLC52A3Q9NQ40 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
SLC52A3Q9NQ40 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.42■□□□□ 0.86
SLC52A3Q9NQ40 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.42■□□□□ 0.86
SLC52A3Q9NQ40 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SLC52A3Q9NQ40 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC52A3Q9NQ40 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC52A3Q9NQ40 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.42■□□□□ 0.86
SLC52A3Q9NQ40 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
SLC52A3Q9NQ40 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SLC52A3Q9NQ40 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SLC52A3Q9NQ40 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SLC52A3Q9NQ40 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SLC52A3Q9NQ40 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SLC52A3Q9NQ40 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SLC52A3Q9NQ40 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SLC52A3Q9NQ40 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SLC52A3Q9NQ40 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
SLC52A3Q9NQ40 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SLC52A3Q9NQ40 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SLC52A3Q9NQ40 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 UNC93B8-201ENST00000511903 705 ntBASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 AC104564.3-201ENST00000582367 638 ntBASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 pRNA.6-201ENST00000610482 90 ntBASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 pRNA.5-201ENST00000612139 90 ntBASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 MIR6724-1-201ENST00000616420 92 ntBASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 MIR6724-2-201ENST00000616483 92 ntBASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 MIR6724-4-201ENST00000617390 92 ntBASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 pRNA.11-201ENST00000618423 90 ntBASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 pRNA.13-201ENST00000619112 90 ntBASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 MIR6724-3-201ENST00000622482 92 ntBASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.4■□□□□ 0.86
SLC52A3Q9NQ40 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
SLC52A3Q9NQ40 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.39■□□□□ 0.86
SLC52A3Q9NQ40 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.39■□□□□ 0.85
SLC52A3Q9NQ40 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms