Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC28BQ9BUN5 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.92■□□□□ 0.94
CCDC28BQ9BUN5 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC28BQ9BUN5 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC28BQ9BUN5 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC28BQ9BUN5 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC28BQ9BUN5 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
CCDC28BQ9BUN5 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
CCDC28BQ9BUN5 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC28BQ9BUN5 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC28BQ9BUN5 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC28BQ9BUN5 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC28BQ9BUN5 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC28BQ9BUN5 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC28BQ9BUN5 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC28BQ9BUN5 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CCDC28BQ9BUN5 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC28BQ9BUN5 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CCDC28BQ9BUN5 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC28BQ9BUN5 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
CCDC28BQ9BUN5 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC28BQ9BUN5 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC28BQ9BUN5 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC28BQ9BUN5 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC28BQ9BUN5 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC28BQ9BUN5 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC28BQ9BUN5 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC28BQ9BUN5 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
CCDC28BQ9BUN5 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC28BQ9BUN5 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC28BQ9BUN5 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC28BQ9BUN5 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC28BQ9BUN5 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC28BQ9BUN5 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
CCDC28BQ9BUN5 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.9■□□□□ 0.94
CCDC28BQ9BUN5 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC28BQ9BUN5 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC28BQ9BUN5 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC28BQ9BUN5 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC28BQ9BUN5 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC28BQ9BUN5 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
CCDC28BQ9BUN5 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
CCDC28BQ9BUN5 AF106564.1-201ENST00000607058 2553 ntBASIC20.9■□□□□ 0.94
CCDC28BQ9BUN5 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.89■□□□□ 0.94
CCDC28BQ9BUN5 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC28BQ9BUN5 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC28BQ9BUN5 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.89■□□□□ 0.93
CCDC28BQ9BUN5 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC28BQ9BUN5 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC28BQ9BUN5 AL499627.2-201ENST00000606283 725 ntBASIC20.89■□□□□ 0.93
CCDC28BQ9BUN5 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.89■□□□□ 0.93
CCDC28BQ9BUN5 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC28BQ9BUN5 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC28BQ9BUN5 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC28BQ9BUN5 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
CCDC28BQ9BUN5 C17orf82-201ENST00000623772 1530 ntBASIC20.88■□□□□ 0.93
CCDC28BQ9BUN5 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC28BQ9BUN5 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
CCDC28BQ9BUN5 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC28BQ9BUN5 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC28BQ9BUN5 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC28BQ9BUN5 AL031848.2-201ENST00000607670 837 ntBASIC20.88■□□□□ 0.93
CCDC28BQ9BUN5 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC28BQ9BUN5 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CCDC28BQ9BUN5 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.88■□□□□ 0.93
CCDC28BQ9BUN5 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC28BQ9BUN5 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC28BQ9BUN5 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC28BQ9BUN5 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC28BQ9BUN5 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC28BQ9BUN5 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC28BQ9BUN5 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC28BQ9BUN5 AC104564.3-201ENST00000582367 638 ntBASIC20.87■□□□□ 0.93
CCDC28BQ9BUN5 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.87■□□□□ 0.93
CCDC28BQ9BUN5 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.87■□□□□ 0.93
CCDC28BQ9BUN5 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC28BQ9BUN5 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC28BQ9BUN5 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC28BQ9BUN5 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC28BQ9BUN5 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC28BQ9BUN5 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC28BQ9BUN5 KRT8P33-201ENST00000508125 1423 ntBASIC20.87■□□□□ 0.93
CCDC28BQ9BUN5 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC28BQ9BUN5 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC28BQ9BUN5 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC28BQ9BUN5 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC28BQ9BUN5 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.86■□□□□ 0.93
CCDC28BQ9BUN5 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.86■□□□□ 0.93
CCDC28BQ9BUN5 AC079089.2-201ENST00000531211 1277 ntBASIC20.86■□□□□ 0.93
CCDC28BQ9BUN5 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC28BQ9BUN5 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC28BQ9BUN5 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CCDC28BQ9BUN5 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.85■□□□□ 0.93
CCDC28BQ9BUN5 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC28BQ9BUN5 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC28BQ9BUN5 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC28BQ9BUN5 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC28BQ9BUN5 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC28BQ9BUN5 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC28BQ9BUN5 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms