Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
CDX2Q99626 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC22.97■■□□□ 1.27
CDX2Q99626 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CDX2Q99626 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC22.96■■□□□ 1.27
CDX2Q99626 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CDX2Q99626 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC22.96■■□□□ 1.27
CDX2Q99626 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CDX2Q99626 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
CDX2Q99626 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC22.96■■□□□ 1.27
CDX2Q99626 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC22.96■■□□□ 1.27
CDX2Q99626 C1QBPP2-201ENST00000528754 825 ntBASIC22.96■■□□□ 1.27
CDX2Q99626 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC22.96■■□□□ 1.27
CDX2Q99626 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CDX2Q99626 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CDX2Q99626 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC22.95■■□□□ 1.26
CDX2Q99626 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC22.95■■□□□ 1.26
CDX2Q99626 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC22.95■■□□□ 1.26
CDX2Q99626 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
CDX2Q99626 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
CDX2Q99626 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
CDX2Q99626 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
CDX2Q99626 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC22.95■■□□□ 1.26
CDX2Q99626 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC22.95■■□□□ 1.26
CDX2Q99626 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC22.95■■□□□ 1.26
CDX2Q99626 OR2A1-AS1-201ENST00000462305 773 ntBASIC22.95■■□□□ 1.26
CDX2Q99626 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC22.95■■□□□ 1.26
CDX2Q99626 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC22.95■■□□□ 1.26
CDX2Q99626 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC22.95■■□□□ 1.26
CDX2Q99626 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC22.95■■□□□ 1.26
CDX2Q99626 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
CDX2Q99626 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
CDX2Q99626 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
CDX2Q99626 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC22.94■■□□□ 1.26
CDX2Q99626 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC22.94■■□□□ 1.26
CDX2Q99626 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC22.94■■□□□ 1.26
CDX2Q99626 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
CDX2Q99626 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC22.94■■□□□ 1.26
CDX2Q99626 SPIB-206ENST00000596074 847 ntTSL 2 BASIC22.94■■□□□ 1.26
CDX2Q99626 AC008403.3-201ENST00000598924 454 ntBASIC22.94■■□□□ 1.26
CDX2Q99626 CYP2T3P-201ENST00000601990 817 ntBASIC22.94■■□□□ 1.26
CDX2Q99626 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC22.94■■□□□ 1.26
CDX2Q99626 CEBPA-AS1-201ENST00000592982 2198 ntBASIC22.94■■□□□ 1.26
CDX2Q99626 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC22.94■■□□□ 1.26
CDX2Q99626 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CDX2Q99626 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CDX2Q99626 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC22.93■■□□□ 1.26
CDX2Q99626 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC22.93■■□□□ 1.26
CDX2Q99626 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC22.93■■□□□ 1.26
CDX2Q99626 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC22.93■■□□□ 1.26
CDX2Q99626 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CDX2Q99626 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC22.93■■□□□ 1.26
CDX2Q99626 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC22.92■■□□□ 1.26
CDX2Q99626 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CDX2Q99626 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
CDX2Q99626 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC22.92■■□□□ 1.26
CDX2Q99626 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC22.92■■□□□ 1.26
CDX2Q99626 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC22.92■■□□□ 1.26
CDX2Q99626 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC22.92■■□□□ 1.26
CDX2Q99626 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CDX2Q99626 USP45-205ENST00000472914 1617 ntTSL 5 BASIC22.92■■□□□ 1.26
CDX2Q99626 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
CDX2Q99626 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC22.92■■□□□ 1.26
CDX2Q99626 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CDX2Q99626 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC22.92■■□□□ 1.26
CDX2Q99626 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CDX2Q99626 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
CDX2Q99626 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC22.91■■□□□ 1.26
CDX2Q99626 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC22.91■■□□□ 1.26
CDX2Q99626 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC22.91■■□□□ 1.26
CDX2Q99626 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
CDX2Q99626 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC22.91■■□□□ 1.26
CDX2Q99626 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CDX2Q99626 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
CDX2Q99626 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.91■■□□□ 1.26
CDX2Q99626 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CDX2Q99626 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CDX2Q99626 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CDX2Q99626 RCN1P1-201ENST00000400413 996 ntBASIC22.9■■□□□ 1.26
CDX2Q99626 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CDX2Q99626 AC133561.5-201ENST00000635547 218 ntBASIC22.9■■□□□ 1.26
CDX2Q99626 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC22.9■■□□□ 1.26
CDX2Q99626 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CDX2Q99626 AC010980.2-201ENST00000587099 1412 ntBASIC22.9■■□□□ 1.26
CDX2Q99626 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.26
CDX2Q99626 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
CDX2Q99626 AC055733.4-201ENST00000638462 1354 ntBASIC22.89■■□□□ 1.26
CDX2Q99626 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
CDX2Q99626 ST7-205ENST00000393446 2114 ntTSL 5 BASIC22.89■■□□□ 1.25
CDX2Q99626 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CDX2Q99626 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CDX2Q99626 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CDX2Q99626 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC22.89■■□□□ 1.25
CDX2Q99626 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC22.89■■□□□ 1.25
CDX2Q99626 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CDX2Q99626 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CDX2Q99626 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CDX2Q99626 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC22.88■■□□□ 1.25
CDX2Q99626 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CDX2Q99626 GATS-209ENST00000454084 1030 ntTSL 3 BASIC22.88■■□□□ 1.25
CDX2Q99626 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms