Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC30.33■■■□□ 2.45
USP47Q96K76 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC30.33■■■□□ 2.45
USP47Q96K76 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC30.33■■■□□ 2.45
USP47Q96K76 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC30.32■■■□□ 2.45
USP47Q96K76 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
USP47Q96K76 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC30.32■■■□□ 2.44
USP47Q96K76 DUX4L2-201ENST00000561772 1275 ntBASIC30.32■■■□□ 2.44
USP47Q96K76 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC30.32■■■□□ 2.44
USP47Q96K76 ANKRD20A6P-201ENST00000618763 204 ntBASIC30.32■■■□□ 2.44
USP47Q96K76 DUX4L6-201ENST00000626483 1275 ntBASIC30.32■■■□□ 2.44
USP47Q96K76 DUX4L1-201ENST00000627662 1275 ntBASIC30.32■■■□□ 2.44
USP47Q96K76 DUX4L8-201ENST00000629013 1275 ntBASIC30.32■■■□□ 2.44
USP47Q96K76 DUX4L3-201ENST00000630187 1275 ntBASIC30.32■■■□□ 2.44
USP47Q96K76 DUX4L7-201ENST00000630678 1275 ntBASIC30.32■■■□□ 2.44
USP47Q96K76 DUX4L5-201ENST00000630834 1275 ntBASIC30.32■■■□□ 2.44
USP47Q96K76 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
USP47Q96K76 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
USP47Q96K76 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC30.32■■■□□ 2.44
USP47Q96K76 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
USP47Q96K76 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
USP47Q96K76 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
USP47Q96K76 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC30.31■■■□□ 2.44
USP47Q96K76 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
USP47Q96K76 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC30.31■■■□□ 2.44
USP47Q96K76 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC30.31■■■□□ 2.44
USP47Q96K76 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC30.31■■■□□ 2.44
USP47Q96K76 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC30.31■■■□□ 2.44
USP47Q96K76 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC30.31■■■□□ 2.44
USP47Q96K76 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
USP47Q96K76 LINC02228-203ENST00000641970 1355 ntBASIC30.31■■■□□ 2.44
USP47Q96K76 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC30.31■■■□□ 2.44
USP47Q96K76 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
USP47Q96K76 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC30.31■■■□□ 2.44
USP47Q96K76 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
USP47Q96K76 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC30.3■■■□□ 2.44
USP47Q96K76 AL034346.1-201ENST00000568244 1277 ntBASIC30.3■■■□□ 2.44
USP47Q96K76 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
USP47Q96K76 LSR-203ENST00000360798 1963 ntTSL 2 BASIC30.3■■■□□ 2.44
USP47Q96K76 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
USP47Q96K76 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
USP47Q96K76 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC30.3■■■□□ 2.44
USP47Q96K76 AP006587.3-201ENST00000525742 1516 ntBASIC30.3■■■□□ 2.44
USP47Q96K76 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC30.3■■■□□ 2.44
USP47Q96K76 AL117328.2-201ENST00000624617 1940 ntBASIC30.3■■■□□ 2.44
USP47Q96K76 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC30.3■■■□□ 2.44
USP47Q96K76 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
USP47Q96K76 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC30.29■■■□□ 2.44
USP47Q96K76 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC30.29■■■□□ 2.44
USP47Q96K76 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
USP47Q96K76 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC30.29■■■□□ 2.44
USP47Q96K76 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC30.29■■■□□ 2.44
USP47Q96K76 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC30.29■■■□□ 2.44
USP47Q96K76 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
USP47Q96K76 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
USP47Q96K76 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC30.28■■■□□ 2.44
USP47Q96K76 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC30.28■■■□□ 2.44
USP47Q96K76 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC30.28■■■□□ 2.44
USP47Q96K76 PARL-206ENST00000435888 1098 ntTSL 5 BASIC30.28■■■□□ 2.44
USP47Q96K76 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
USP47Q96K76 AC055733.4-201ENST00000638462 1354 ntBASIC30.28■■■□□ 2.44
USP47Q96K76 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
USP47Q96K76 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
USP47Q96K76 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
USP47Q96K76 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
USP47Q96K76 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC30.28■■■□□ 2.44
USP47Q96K76 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC30.28■■■□□ 2.44
USP47Q96K76 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
USP47Q96K76 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
USP47Q96K76 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC30.28■■■□□ 2.44
USP47Q96K76 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC30.28■■■□□ 2.44
USP47Q96K76 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
USP47Q96K76 AC009237.3-201ENST00000393279 1427 ntBASIC30.27■■■□□ 2.44
USP47Q96K76 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
USP47Q96K76 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
USP47Q96K76 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
USP47Q96K76 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC30.27■■■□□ 2.44
USP47Q96K76 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC30.27■■■□□ 2.44
USP47Q96K76 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
USP47Q96K76 KRT18P14-201ENST00000534205 1250 ntBASIC30.27■■■□□ 2.44
USP47Q96K76 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
USP47Q96K76 AC092053.2-201ENST00000640557 1818 ntBASIC30.27■■■□□ 2.44
USP47Q96K76 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC30.26■■■□□ 2.43
USP47Q96K76 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
USP47Q96K76 KRT18P61-201ENST00000585825 1298 ntBASIC30.26■■■□□ 2.43
USP47Q96K76 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
USP47Q96K76 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
USP47Q96K76 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC30.25■■■□□ 2.43
USP47Q96K76 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
USP47Q96K76 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC30.25■■■□□ 2.43
USP47Q96K76 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC30.25■■■□□ 2.43
USP47Q96K76 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC30.25■■■□□ 2.43
USP47Q96K76 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC30.25■■■□□ 2.43
USP47Q96K76 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
USP47Q96K76 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC30.24■■■□□ 2.43
USP47Q96K76 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
USP47Q96K76 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC30.24■■■□□ 2.43
USP47Q96K76 CPT2-209ENST00000636935 803 ntTSL 5 BASIC30.24■■■□□ 2.43
USP47Q96K76 FAM99A-202ENST00000538190 1989 ntBASIC30.24■■■□□ 2.43
USP47Q96K76 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC30.23■■■□□ 2.43
USP47Q96K76 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms