Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
TTC28Q96AY4 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
TTC28Q96AY4 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
TTC28Q96AY4 AL049637.2-201ENST00000641778 930 ntBASIC22.32■■□□□ 1.16
TTC28Q96AY4 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC22.31■■□□□ 1.16
TTC28Q96AY4 KRT17P2-201ENST00000300992 1314 ntBASIC22.31■■□□□ 1.16
TTC28Q96AY4 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
TTC28Q96AY4 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC22.31■■□□□ 1.16
TTC28Q96AY4 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
TTC28Q96AY4 AL049597.2-201ENST00000565575 961 ntBASIC22.31■■□□□ 1.16
TTC28Q96AY4 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TTC28Q96AY4 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC22.31■■□□□ 1.16
TTC28Q96AY4 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
TTC28Q96AY4 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC22.31■■□□□ 1.16
TTC28Q96AY4 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TTC28Q96AY4 CRAT-202ENST00000393384 973 ntTSL 2 BASIC22.3■■□□□ 1.16
TTC28Q96AY4 GATS-209ENST00000454084 1030 ntTSL 3 BASIC22.3■■□□□ 1.16
TTC28Q96AY4 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC22.3■■□□□ 1.16
TTC28Q96AY4 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TTC28Q96AY4 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TTC28Q96AY4 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC22.3■■□□□ 1.16
TTC28Q96AY4 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC22.3■■□□□ 1.16
TTC28Q96AY4 TSPY15P-201ENST00000457163 923 ntBASIC22.3■■□□□ 1.16
TTC28Q96AY4 SERP1-208ENST00000491660 830 ntTSL 2 BASIC22.3■■□□□ 1.16
TTC28Q96AY4 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TTC28Q96AY4 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TTC28Q96AY4 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC22.29■■□□□ 1.16
TTC28Q96AY4 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC22.29■■□□□ 1.16
TTC28Q96AY4 AC233263.1-201ENST00000578059 224 ntBASIC22.29■■□□□ 1.16
TTC28Q96AY4 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
TTC28Q96AY4 MIR6089-201ENST00000616698 64 ntBASIC22.29■■□□□ 1.16
TTC28Q96AY4 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TTC28Q96AY4 TPM4P1-201ENST00000436100 807 ntBASIC22.29■■□□□ 1.16
TTC28Q96AY4 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC22.29■■□□□ 1.16
TTC28Q96AY4 PLLP-204ENST00000569059 665 ntTSL 3 BASIC22.29■■□□□ 1.16
TTC28Q96AY4 AC069236.1-201ENST00000604339 616 ntBASIC22.29■■□□□ 1.16
TTC28Q96AY4 AL353708.3-201ENST00000610272 989 ntBASIC22.29■■□□□ 1.16
TTC28Q96AY4 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC22.28■■□□□ 1.16
TTC28Q96AY4 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
TTC28Q96AY4 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC22.28■■□□□ 1.16
TTC28Q96AY4 AC010501.1-201ENST00000606270 1962 ntBASIC22.28■■□□□ 1.16
TTC28Q96AY4 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
TTC28Q96AY4 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
TTC28Q96AY4 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
TTC28Q96AY4 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
TTC28Q96AY4 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC22.27■■□□□ 1.16
TTC28Q96AY4 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
TTC28Q96AY4 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
TTC28Q96AY4 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC22.27■■□□□ 1.16
TTC28Q96AY4 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
TTC28Q96AY4 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
TTC28Q96AY4 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC22.26■■□□□ 1.15
TTC28Q96AY4 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC22.26■■□□□ 1.15
TTC28Q96AY4 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC22.26■■□□□ 1.15
TTC28Q96AY4 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC22.26■■□□□ 1.15
TTC28Q96AY4 MIR4785-201ENST00000585005 73 ntBASIC22.26■■□□□ 1.15
TTC28Q96AY4 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TTC28Q96AY4 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
TTC28Q96AY4 TSPY7P-201ENST00000431358 1114 ntBASIC22.26■■□□□ 1.15
TTC28Q96AY4 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC22.26■■□□□ 1.15
TTC28Q96AY4 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC22.26■■□□□ 1.15
TTC28Q96AY4 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC22.26■■□□□ 1.15
TTC28Q96AY4 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TTC28Q96AY4 SNX21-213ENST00000614929 587 ntTSL 5 BASIC22.26■■□□□ 1.15
TTC28Q96AY4 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC22.26■■□□□ 1.15
TTC28Q96AY4 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TTC28Q96AY4 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
TTC28Q96AY4 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC22.25■■□□□ 1.15
TTC28Q96AY4 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC22.25■■□□□ 1.15
TTC28Q96AY4 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC22.25■■□□□ 1.15
TTC28Q96AY4 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC22.25■■□□□ 1.15
TTC28Q96AY4 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
TTC28Q96AY4 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC22.25■■□□□ 1.15
TTC28Q96AY4 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
TTC28Q96AY4 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC22.25■■□□□ 1.15
TTC28Q96AY4 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TTC28Q96AY4 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
TTC28Q96AY4 AC009237.3-201ENST00000393279 1427 ntBASIC22.24■■□□□ 1.15
TTC28Q96AY4 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC22.24■■□□□ 1.15
TTC28Q96AY4 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC22.24■■□□□ 1.15
TTC28Q96AY4 AL162412.1-201ENST00000567129 965 ntBASIC22.24■■□□□ 1.15
TTC28Q96AY4 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
TTC28Q96AY4 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
TTC28Q96AY4 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
TTC28Q96AY4 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC22.24■■□□□ 1.15
TTC28Q96AY4 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
TTC28Q96AY4 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TTC28Q96AY4 RNF146-204ENST00000476956 884 ntTSL 2 BASIC22.24■■□□□ 1.15
TTC28Q96AY4 KRT18P20-201ENST00000548986 1279 ntBASIC22.24■■□□□ 1.15
TTC28Q96AY4 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC22.24■■□□□ 1.15
TTC28Q96AY4 RN7SL471P-201ENST00000580476 299 ntBASIC22.24■■□□□ 1.15
TTC28Q96AY4 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC22.24■■□□□ 1.15
TTC28Q96AY4 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
TTC28Q96AY4 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
TTC28Q96AY4 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC22.24■■□□□ 1.15
TTC28Q96AY4 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC22.24■■□□□ 1.15
TTC28Q96AY4 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TTC28Q96AY4 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC22.23■■□□□ 1.15
TTC28Q96AY4 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
TTC28Q96AY4 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms