Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LMX1AQ8TE12 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
LMX1AQ8TE12 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LMX1AQ8TE12 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LMX1AQ8TE12 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LMX1AQ8TE12 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
LMX1AQ8TE12 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.04■□□□□ 0.96
LMX1AQ8TE12 MIR663A-201ENST00000385250 93 ntBASIC21.04■□□□□ 0.96
LMX1AQ8TE12 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC21.04■□□□□ 0.96
LMX1AQ8TE12 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.04■□□□□ 0.96
LMX1AQ8TE12 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.04■□□□□ 0.96
LMX1AQ8TE12 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC21.04■□□□□ 0.96
LMX1AQ8TE12 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.04■□□□□ 0.96
LMX1AQ8TE12 AP001160.3-201ENST00000601484 763 ntBASIC21.04■□□□□ 0.96
LMX1AQ8TE12 UBE2DNL-204ENST00000602536 740 ntBASIC21.04■□□□□ 0.96
LMX1AQ8TE12 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.04■□□□□ 0.96
LMX1AQ8TE12 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LMX1AQ8TE12 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LMX1AQ8TE12 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.04■□□□□ 0.96
LMX1AQ8TE12 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LMX1AQ8TE12 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
LMX1AQ8TE12 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.03■□□□□ 0.96
LMX1AQ8TE12 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.03■□□□□ 0.96
LMX1AQ8TE12 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.03■□□□□ 0.96
LMX1AQ8TE12 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.03■□□□□ 0.96
LMX1AQ8TE12 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LMX1AQ8TE12 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.02■□□□□ 0.96
LMX1AQ8TE12 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LMX1AQ8TE12 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.02■□□□□ 0.96
LMX1AQ8TE12 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.02■□□□□ 0.96
LMX1AQ8TE12 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
LMX1AQ8TE12 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21.02■□□□□ 0.96
LMX1AQ8TE12 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.02■□□□□ 0.96
LMX1AQ8TE12 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.02■□□□□ 0.96
LMX1AQ8TE12 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.02■□□□□ 0.96
LMX1AQ8TE12 AC104771.1-201ENST00000603335 964 ntBASIC21.02■□□□□ 0.96
LMX1AQ8TE12 AL109923.1-201ENST00000618799 583 ntBASIC21.02■□□□□ 0.96
LMX1AQ8TE12 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC21.02■□□□□ 0.96
LMX1AQ8TE12 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LMX1AQ8TE12 LINC00526-201ENST00000581067 1875 ntBASIC21.02■□□□□ 0.96
LMX1AQ8TE12 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LMX1AQ8TE12 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
LMX1AQ8TE12 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
LMX1AQ8TE12 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.01■□□□□ 0.95
LMX1AQ8TE12 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.01■□□□□ 0.95
LMX1AQ8TE12 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.01■□□□□ 0.95
LMX1AQ8TE12 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.01■□□□□ 0.95
LMX1AQ8TE12 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.01■□□□□ 0.95
LMX1AQ8TE12 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.01■□□□□ 0.95
LMX1AQ8TE12 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LMX1AQ8TE12 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
LMX1AQ8TE12 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LMX1AQ8TE12 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21■□□□□ 0.95
LMX1AQ8TE12 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
LMX1AQ8TE12 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LMX1AQ8TE12 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21■□□□□ 0.95
LMX1AQ8TE12 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21■□□□□ 0.95
LMX1AQ8TE12 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21■□□□□ 0.95
LMX1AQ8TE12 AL034346.1-201ENST00000568244 1277 ntBASIC21■□□□□ 0.95
LMX1AQ8TE12 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
LMX1AQ8TE12 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21■□□□□ 0.95
LMX1AQ8TE12 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
LMX1AQ8TE12 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
LMX1AQ8TE12 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LMX1AQ8TE12 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
LMX1AQ8TE12 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LMX1AQ8TE12 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LMX1AQ8TE12 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.99■□□□□ 0.95
LMX1AQ8TE12 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
LMX1AQ8TE12 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.99■□□□□ 0.95
LMX1AQ8TE12 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LMX1AQ8TE12 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LMX1AQ8TE12 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LMX1AQ8TE12 AL355802.2-201ENST00000402069 882 ntBASIC20.99■□□□□ 0.95
LMX1AQ8TE12 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
LMX1AQ8TE12 NCF1B-203ENST00000435988 1254 ntBASIC20.99■□□□□ 0.95
LMX1AQ8TE12 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LMX1AQ8TE12 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.99■□□□□ 0.95
LMX1AQ8TE12 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
LMX1AQ8TE12 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
LMX1AQ8TE12 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.99■□□□□ 0.95
LMX1AQ8TE12 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LMX1AQ8TE12 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
LMX1AQ8TE12 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LMX1AQ8TE12 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LMX1AQ8TE12 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.98■□□□□ 0.95
LMX1AQ8TE12 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LMX1AQ8TE12 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.98■□□□□ 0.95
LMX1AQ8TE12 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
LMX1AQ8TE12 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
LMX1AQ8TE12 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
LMX1AQ8TE12 MYCNOS-205ENST00000641950 531 ntBASIC20.98■□□□□ 0.95
LMX1AQ8TE12 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LMX1AQ8TE12 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LMX1AQ8TE12 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LMX1AQ8TE12 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LMX1AQ8TE12 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.97■□□□□ 0.95
LMX1AQ8TE12 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
LMX1AQ8TE12 GPX1P1-201ENST00000388829 606 ntBASIC20.97■□□□□ 0.95
LMX1AQ8TE12 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms