Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CCHCR1Q8TD31 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CCHCR1Q8TD31 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CCHCR1Q8TD31 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CCHCR1Q8TD31 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC22.36■■□□□ 1.17
CCHCR1Q8TD31 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
CCHCR1Q8TD31 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC22.36■■□□□ 1.17
CCHCR1Q8TD31 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC22.36■■□□□ 1.17
CCHCR1Q8TD31 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC22.36■■□□□ 1.17
CCHCR1Q8TD31 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CCHCR1Q8TD31 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
CCHCR1Q8TD31 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC22.36■■□□□ 1.17
CCHCR1Q8TD31 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CCHCR1Q8TD31 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
CCHCR1Q8TD31 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC22.36■■□□□ 1.17
CCHCR1Q8TD31 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC22.36■■□□□ 1.17
CCHCR1Q8TD31 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
CCHCR1Q8TD31 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CCHCR1Q8TD31 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC22.35■■□□□ 1.17
CCHCR1Q8TD31 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CCHCR1Q8TD31 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC22.35■■□□□ 1.17
CCHCR1Q8TD31 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
CCHCR1Q8TD31 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
CCHCR1Q8TD31 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC22.35■■□□□ 1.17
CCHCR1Q8TD31 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
CCHCR1Q8TD31 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
CCHCR1Q8TD31 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
CCHCR1Q8TD31 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCHCR1Q8TD31 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
CCHCR1Q8TD31 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
CCHCR1Q8TD31 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCHCR1Q8TD31 SYT6-210ENST00000641643 1587 ntBASIC22.34■■□□□ 1.17
CCHCR1Q8TD31 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC22.34■■□□□ 1.17
CCHCR1Q8TD31 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCHCR1Q8TD31 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC22.34■■□□□ 1.17
CCHCR1Q8TD31 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCHCR1Q8TD31 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCHCR1Q8TD31 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCHCR1Q8TD31 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CCHCR1Q8TD31 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CCHCR1Q8TD31 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC22.33■■□□□ 1.17
CCHCR1Q8TD31 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC22.33■■□□□ 1.17
CCHCR1Q8TD31 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CCHCR1Q8TD31 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.17
CCHCR1Q8TD31 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC22.33■■□□□ 1.17
CCHCR1Q8TD31 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC22.33■■□□□ 1.17
CCHCR1Q8TD31 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.17
CCHCR1Q8TD31 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CCHCR1Q8TD31 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.16
CCHCR1Q8TD31 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.16
CCHCR1Q8TD31 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.16
CCHCR1Q8TD31 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
CCHCR1Q8TD31 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
CCHCR1Q8TD31 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC22.33■■□□□ 1.16
CCHCR1Q8TD31 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CCHCR1Q8TD31 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCHCR1Q8TD31 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CCHCR1Q8TD31 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCHCR1Q8TD31 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCHCR1Q8TD31 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCHCR1Q8TD31 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CCHCR1Q8TD31 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC22.32■■□□□ 1.16
CCHCR1Q8TD31 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCHCR1Q8TD31 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCHCR1Q8TD31 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCHCR1Q8TD31 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
CCHCR1Q8TD31 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC22.32■■□□□ 1.16
CCHCR1Q8TD31 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
CCHCR1Q8TD31 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC22.31■■□□□ 1.16
CCHCR1Q8TD31 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
CCHCR1Q8TD31 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
CCHCR1Q8TD31 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
CCHCR1Q8TD31 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
CCHCR1Q8TD31 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
CCHCR1Q8TD31 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC22.31■■□□□ 1.16
CCHCR1Q8TD31 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CCHCR1Q8TD31 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC22.31■■□□□ 1.16
CCHCR1Q8TD31 SF1-220ENST00000626028 704 ntTSL 2 BASIC22.31■■□□□ 1.16
CCHCR1Q8TD31 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CCHCR1Q8TD31 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC22.31■■□□□ 1.16
CCHCR1Q8TD31 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC22.31■■□□□ 1.16
CCHCR1Q8TD31 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
CCHCR1Q8TD31 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCHCR1Q8TD31 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CCHCR1Q8TD31 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCHCR1Q8TD31 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
CCHCR1Q8TD31 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC22.3■■□□□ 1.16
CCHCR1Q8TD31 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CCHCR1Q8TD31 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC22.3■■□□□ 1.16
CCHCR1Q8TD31 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC22.3■■□□□ 1.16
CCHCR1Q8TD31 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC22.3■■□□□ 1.16
CCHCR1Q8TD31 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC22.3■■□□□ 1.16
CCHCR1Q8TD31 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
CCHCR1Q8TD31 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCHCR1Q8TD31 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCHCR1Q8TD31 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
CCHCR1Q8TD31 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCHCR1Q8TD31 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCHCR1Q8TD31 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCHCR1Q8TD31 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms