Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN3Q8NCR9 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN3Q8NCR9 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN3Q8NCR9 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN3Q8NCR9 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN3Q8NCR9 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN3Q8NCR9 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN3Q8NCR9 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN3Q8NCR9 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN3Q8NCR9 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLRN3Q8NCR9 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLRN3Q8NCR9 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLRN3Q8NCR9 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CLRN3Q8NCR9 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CLRN3Q8NCR9 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLRN3Q8NCR9 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
CLRN3Q8NCR9 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLRN3Q8NCR9 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.17■□□□□ 0.34
CLRN3Q8NCR9 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLRN3Q8NCR9 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLRN3Q8NCR9 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.17■□□□□ 0.34
CLRN3Q8NCR9 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN3Q8NCR9 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN3Q8NCR9 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN3Q8NCR9 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN3Q8NCR9 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN3Q8NCR9 AL359258.2-201ENST00000564063 1566 ntBASIC17.16■□□□□ 0.34
CLRN3Q8NCR9 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.16■□□□□ 0.34
CLRN3Q8NCR9 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN3Q8NCR9 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN3Q8NCR9 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN3Q8NCR9 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN3Q8NCR9 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN3Q8NCR9 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.16■□□□□ 0.34
CLRN3Q8NCR9 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
CLRN3Q8NCR9 AC087742.1-201ENST00000575880 1738 ntBASIC17.16■□□□□ 0.34
CLRN3Q8NCR9 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN3Q8NCR9 Z98882.1-201ENST00000622160 2253 ntBASIC17.16■□□□□ 0.34
CLRN3Q8NCR9 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN3Q8NCR9 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
CLRN3Q8NCR9 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.14■□□□□ 0.34
CLRN3Q8NCR9 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
CLRN3Q8NCR9 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
CLRN3Q8NCR9 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLRN3Q8NCR9 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLRN3Q8NCR9 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLRN3Q8NCR9 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
CLRN3Q8NCR9 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC17.14■□□□□ 0.33
CLRN3Q8NCR9 LTB4R2-202ENST00000528054 3092 ntBASIC17.14■□□□□ 0.33
CLRN3Q8NCR9 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLRN3Q8NCR9 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLRN3Q8NCR9 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLRN3Q8NCR9 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLRN3Q8NCR9 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
CLRN3Q8NCR9 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLRN3Q8NCR9 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLRN3Q8NCR9 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.14■□□□□ 0.33
CLRN3Q8NCR9 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLRN3Q8NCR9 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLRN3Q8NCR9 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLRN3Q8NCR9 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.13■□□□□ 0.33
CLRN3Q8NCR9 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.13■□□□□ 0.33
CLRN3Q8NCR9 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLRN3Q8NCR9 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLRN3Q8NCR9 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLRN3Q8NCR9 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.13■□□□□ 0.33
CLRN3Q8NCR9 BOD1-206ENST00000480951 814 ntTSL 2 BASIC17.13■□□□□ 0.33
CLRN3Q8NCR9 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLRN3Q8NCR9 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLRN3Q8NCR9 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLRN3Q8NCR9 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
CLRN3Q8NCR9 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CLRN3Q8NCR9 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC17.13■□□□□ 0.33
CLRN3Q8NCR9 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLRN3Q8NCR9 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLRN3Q8NCR9 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLRN3Q8NCR9 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms