Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM40Q6P9F5 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
TRIM40Q6P9F5 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM40Q6P9F5 MIR638-201ENST00000385237 100 ntBASIC20.66■□□□□ 0.9
TRIM40Q6P9F5 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM40Q6P9F5 AC005837.3-201ENST00000612163 286 ntBASIC20.66■□□□□ 0.9
TRIM40Q6P9F5 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
TRIM40Q6P9F5 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
TRIM40Q6P9F5 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM40Q6P9F5 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM40Q6P9F5 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM40Q6P9F5 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM40Q6P9F5 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM40Q6P9F5 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM40Q6P9F5 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.65■□□□□ 0.9
TRIM40Q6P9F5 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM40Q6P9F5 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM40Q6P9F5 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM40Q6P9F5 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM40Q6P9F5 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.65■□□□□ 0.9
TRIM40Q6P9F5 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM40Q6P9F5 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
TRIM40Q6P9F5 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM40Q6P9F5 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.65■□□□□ 0.9
TRIM40Q6P9F5 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.64■□□□□ 0.9
TRIM40Q6P9F5 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM40Q6P9F5 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
TRIM40Q6P9F5 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.64■□□□□ 0.89
TRIM40Q6P9F5 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.64■□□□□ 0.89
TRIM40Q6P9F5 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM40Q6P9F5 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.64■□□□□ 0.89
TRIM40Q6P9F5 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM40Q6P9F5 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM40Q6P9F5 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM40Q6P9F5 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 TSPY26P-201ENST00000476365 1326 ntBASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.63■□□□□ 0.89
TRIM40Q6P9F5 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM40Q6P9F5 OR7E47P-201ENST00000546390 1422 ntBASIC20.62■□□□□ 0.89
TRIM40Q6P9F5 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM40Q6P9F5 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
TRIM40Q6P9F5 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
TRIM40Q6P9F5 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM40Q6P9F5 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.62■□□□□ 0.89
TRIM40Q6P9F5 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM40Q6P9F5 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM40Q6P9F5 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM40Q6P9F5 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM40Q6P9F5 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.62■□□□□ 0.89
TRIM40Q6P9F5 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM40Q6P9F5 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM40Q6P9F5 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM40Q6P9F5 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM40Q6P9F5 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM40Q6P9F5 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM40Q6P9F5 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.61■□□□□ 0.89
TRIM40Q6P9F5 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM40Q6P9F5 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.61■□□□□ 0.89
TRIM40Q6P9F5 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM40Q6P9F5 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM40Q6P9F5 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM40Q6P9F5 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM40Q6P9F5 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM40Q6P9F5 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM40Q6P9F5 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM40Q6P9F5 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM40Q6P9F5 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM40Q6P9F5 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.61■□□□□ 0.89
TRIM40Q6P9F5 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.61■□□□□ 0.89
TRIM40Q6P9F5 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM40Q6P9F5 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
TRIM40Q6P9F5 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM40Q6P9F5 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM40Q6P9F5 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.6■□□□□ 0.89
TRIM40Q6P9F5 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM40Q6P9F5 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.6■□□□□ 0.89
TRIM40Q6P9F5 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM40Q6P9F5 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM40Q6P9F5 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms