Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC22.56■■□□□ 1.2
RNF43Q68DV7 AC012414.1-201ENST00000556676 535 ntBASIC22.56■■□□□ 1.2
RNF43Q68DV7 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC22.56■■□□□ 1.2
RNF43Q68DV7 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
RNF43Q68DV7 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
RNF43Q68DV7 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
RNF43Q68DV7 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC22.56■■□□□ 1.2
RNF43Q68DV7 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
RNF43Q68DV7 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC22.56■■□□□ 1.2
RNF43Q68DV7 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC22.55■■□□□ 1.2
RNF43Q68DV7 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
RNF43Q68DV7 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RNF43Q68DV7 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RNF43Q68DV7 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
RNF43Q68DV7 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RNF43Q68DV7 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
RNF43Q68DV7 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC22.55■■□□□ 1.2
RNF43Q68DV7 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC22.55■■□□□ 1.2
RNF43Q68DV7 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC22.55■■□□□ 1.2
RNF43Q68DV7 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC22.55■■□□□ 1.2
RNF43Q68DV7 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
RNF43Q68DV7 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RNF43Q68DV7 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC22.55■■□□□ 1.2
RNF43Q68DV7 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
RNF43Q68DV7 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
RNF43Q68DV7 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
RNF43Q68DV7 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
RNF43Q68DV7 EI24-211ENST00000534546 1544 ntTSL 2 BASIC22.54■■□□□ 1.2
RNF43Q68DV7 LHPP-203ENST00000392757 840 ntTSL 3 BASIC22.54■■□□□ 1.2
RNF43Q68DV7 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC22.54■■□□□ 1.2
RNF43Q68DV7 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
RNF43Q68DV7 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC22.54■■□□□ 1.2
RNF43Q68DV7 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC22.54■■□□□ 1.2
RNF43Q68DV7 AL354811.1-201ENST00000610286 706 ntBASIC22.54■■□□□ 1.2
RNF43Q68DV7 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RNF43Q68DV7 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RNF43Q68DV7 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC22.54■■□□□ 1.2
RNF43Q68DV7 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RNF43Q68DV7 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RNF43Q68DV7 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC22.53■■□□□ 1.2
RNF43Q68DV7 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RNF43Q68DV7 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
RNF43Q68DV7 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RNF43Q68DV7 DLX3-202ENST00000512495 834 ntTSL 2 BASIC22.53■■□□□ 1.2
RNF43Q68DV7 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RNF43Q68DV7 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC22.53■■□□□ 1.2
RNF43Q68DV7 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RNF43Q68DV7 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
RNF43Q68DV7 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC22.53■■□□□ 1.2
RNF43Q68DV7 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC22.53■■□□□ 1.2
RNF43Q68DV7 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
RNF43Q68DV7 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
RNF43Q68DV7 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC22.52■■□□□ 1.2
RNF43Q68DV7 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
RNF43Q68DV7 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
RNF43Q68DV7 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC22.52■■□□□ 1.2
RNF43Q68DV7 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
RNF43Q68DV7 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC22.52■■□□□ 1.2
RNF43Q68DV7 DENND3-207ENST00000518347 850 ntTSL 2 BASIC22.52■■□□□ 1.2
RNF43Q68DV7 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC22.52■■□□□ 1.2
RNF43Q68DV7 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
RNF43Q68DV7 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
RNF43Q68DV7 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC22.52■■□□□ 1.2
RNF43Q68DV7 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC22.52■■□□□ 1.2
RNF43Q68DV7 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC22.52■■□□□ 1.2
RNF43Q68DV7 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
RNF43Q68DV7 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
RNF43Q68DV7 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
RNF43Q68DV7 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC22.51■■□□□ 1.19
RNF43Q68DV7 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RNF43Q68DV7 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC22.51■■□□□ 1.19
RNF43Q68DV7 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RNF43Q68DV7 NME4-202ENST00000382940 766 ntTSL 3 BASIC22.51■■□□□ 1.19
RNF43Q68DV7 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
RNF43Q68DV7 AC123595.1-201ENST00000440769 1046 ntBASIC22.51■■□□□ 1.19
RNF43Q68DV7 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC22.51■■□□□ 1.19
RNF43Q68DV7 DUX4L2-201ENST00000561772 1275 ntBASIC22.51■■□□□ 1.19
RNF43Q68DV7 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC22.51■■□□□ 1.19
RNF43Q68DV7 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC22.51■■□□□ 1.19
RNF43Q68DV7 NME4-211ENST00000620944 1193 ntTSL 2 BASIC22.51■■□□□ 1.19
RNF43Q68DV7 DUX4L6-201ENST00000626483 1275 ntBASIC22.51■■□□□ 1.19
RNF43Q68DV7 DUX4L1-201ENST00000627662 1275 ntBASIC22.51■■□□□ 1.19
RNF43Q68DV7 DUX4L8-201ENST00000629013 1275 ntBASIC22.51■■□□□ 1.19
RNF43Q68DV7 DUX4L3-201ENST00000630187 1275 ntBASIC22.51■■□□□ 1.19
RNF43Q68DV7 DUX4L7-201ENST00000630678 1275 ntBASIC22.51■■□□□ 1.19
RNF43Q68DV7 DUX4L5-201ENST00000630834 1275 ntBASIC22.51■■□□□ 1.19
RNF43Q68DV7 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
RNF43Q68DV7 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RNF43Q68DV7 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RNF43Q68DV7 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC22.51■■□□□ 1.19
RNF43Q68DV7 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC22.5■■□□□ 1.19
RNF43Q68DV7 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
RNF43Q68DV7 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC22.5■■□□□ 1.19
RNF43Q68DV7 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
RNF43Q68DV7 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
RNF43Q68DV7 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC22.5■■□□□ 1.19
RNF43Q68DV7 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
RNF43Q68DV7 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC22.5■■□□□ 1.19
RNF43Q68DV7 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RNF43Q68DV7 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms