Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.52■■□□□ 1.04
PTPN4P29074 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
PTPN4P29074 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PTPN4P29074 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PTPN4P29074 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.03
PTPN4P29074 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTPN4P29074 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.51■■□□□ 1.03
PTPN4P29074 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PTPN4P29074 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.51■■□□□ 1.03
PTPN4P29074 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTPN4P29074 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTPN4P29074 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.51■■□□□ 1.03
PTPN4P29074 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.5■■□□□ 1.03
PTPN4P29074 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.5■■□□□ 1.03
PTPN4P29074 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PTPN4P29074 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.5■■□□□ 1.03
PTPN4P29074 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PTPN4P29074 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.5■■□□□ 1.03
PTPN4P29074 AC087742.1-201ENST00000575880 1738 ntBASIC21.5■■□□□ 1.03
PTPN4P29074 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PTPN4P29074 SYT6-210ENST00000641643 1587 ntBASIC21.5■■□□□ 1.03
PTPN4P29074 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
PTPN4P29074 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PTPN4P29074 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PTPN4P29074 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.5■■□□□ 1.03
PTPN4P29074 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.5■■□□□ 1.03
PTPN4P29074 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
PTPN4P29074 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PTPN4P29074 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PTPN4P29074 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PTPN4P29074 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.5■■□□□ 1.03
PTPN4P29074 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PTPN4P29074 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTPN4P29074 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.49■■□□□ 1.03
PTPN4P29074 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
PTPN4P29074 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
PTPN4P29074 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTPN4P29074 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.49■■□□□ 1.03
PTPN4P29074 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTPN4P29074 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTPN4P29074 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
PTPN4P29074 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
PTPN4P29074 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
PTPN4P29074 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PTPN4P29074 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTPN4P29074 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTPN4P29074 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTPN4P29074 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.48■■□□□ 1.03
PTPN4P29074 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTPN4P29074 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTPN4P29074 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTPN4P29074 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PTPN4P29074 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PTPN4P29074 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.48■■□□□ 1.03
PTPN4P29074 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
PTPN4P29074 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.48■■□□□ 1.03
PTPN4P29074 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTPN4P29074 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.47■■□□□ 1.03
PTPN4P29074 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTPN4P29074 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.47■■□□□ 1.03
PTPN4P29074 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PTPN4P29074 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
PTPN4P29074 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
PTPN4P29074 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
PTPN4P29074 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.47■■□□□ 1.03
PTPN4P29074 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTPN4P29074 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.47■■□□□ 1.03
PTPN4P29074 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.47■■□□□ 1.03
PTPN4P29074 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.47■■□□□ 1.03
PTPN4P29074 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTPN4P29074 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.47■■□□□ 1.03
PTPN4P29074 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTPN4P29074 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.47■■□□□ 1.03
PTPN4P29074 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PTPN4P29074 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.46■■□□□ 1.03
PTPN4P29074 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTPN4P29074 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTPN4P29074 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PTPN4P29074 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTPN4P29074 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTPN4P29074 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTPN4P29074 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.46■■□□□ 1.03
PTPN4P29074 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC21.46■■□□□ 1.03
PTPN4P29074 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.46■■□□□ 1.03
PTPN4P29074 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PTPN4P29074 AL136967.2-201ENST00000623968 743 ntBASIC21.46■■□□□ 1.03
PTPN4P29074 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PTPN4P29074 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PTPN4P29074 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTPN4P29074 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PTPN4P29074 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTPN4P29074 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
PTPN4P29074 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
PTPN4P29074 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.45■■□□□ 1.02
PTPN4P29074 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTPN4P29074 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTPN4P29074 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.45■■□□□ 1.02
PTPN4P29074 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.45■■□□□ 1.02
PTPN4P29074 AF213884.3-201ENST00000563833 479 ntBASIC21.45■■□□□ 1.02
PTPN4P29074 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms