Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LDLRP01130 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.68■□□□□ 0.9
LDLRP01130 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LDLRP01130 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.68■□□□□ 0.9
LDLRP01130 MIR4767-201ENST00000582827 78 ntBASIC20.68■□□□□ 0.9
LDLRP01130 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.68■□□□□ 0.9
LDLRP01130 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LDLRP01130 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LDLRP01130 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LDLRP01130 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LDLRP01130 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
LDLRP01130 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LDLRP01130 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LDLRP01130 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LDLRP01130 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
LDLRP01130 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
LDLRP01130 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.67■□□□□ 0.9
LDLRP01130 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LDLRP01130 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.67■□□□□ 0.9
LDLRP01130 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LDLRP01130 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
LDLRP01130 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.67■□□□□ 0.9
LDLRP01130 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.67■□□□□ 0.9
LDLRP01130 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LDLRP01130 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LDLRP01130 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LDLRP01130 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LDLRP01130 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.66■□□□□ 0.9
LDLRP01130 SYT6-210ENST00000641643 1587 ntBASIC20.66■□□□□ 0.9
LDLRP01130 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LDLRP01130 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LDLRP01130 FAM99A-202ENST00000538190 1989 ntBASIC20.66■□□□□ 0.9
LDLRP01130 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
LDLRP01130 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LDLRP01130 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LDLRP01130 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
LDLRP01130 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
LDLRP01130 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LDLRP01130 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LDLRP01130 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
LDLRP01130 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
LDLRP01130 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.65■□□□□ 0.9
LDLRP01130 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LDLRP01130 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LDLRP01130 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.65■□□□□ 0.9
LDLRP01130 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LDLRP01130 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.65■□□□□ 0.9
LDLRP01130 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LDLRP01130 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LDLRP01130 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LDLRP01130 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LDLRP01130 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LDLRP01130 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
LDLRP01130 IRS3P-201ENST00000223076 1006 ntBASIC20.64■□□□□ 0.89
LDLRP01130 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.64■□□□□ 0.89
LDLRP01130 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.64■□□□□ 0.89
LDLRP01130 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
LDLRP01130 AC027682.1-201ENST00000562846 899 ntBASIC20.64■□□□□ 0.89
LDLRP01130 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.64■□□□□ 0.89
LDLRP01130 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.64■□□□□ 0.89
LDLRP01130 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LDLRP01130 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
LDLRP01130 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.63■□□□□ 0.89
LDLRP01130 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
LDLRP01130 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
LDLRP01130 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.63■□□□□ 0.89
LDLRP01130 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.63■□□□□ 0.89
LDLRP01130 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.63■□□□□ 0.89
LDLRP01130 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.63■□□□□ 0.89
LDLRP01130 AC092171.4-201ENST00000609130 632 ntBASIC20.63■□□□□ 0.89
LDLRP01130 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LDLRP01130 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.63■□□□□ 0.89
LDLRP01130 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
LDLRP01130 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
LDLRP01130 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LDLRP01130 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LDLRP01130 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
LDLRP01130 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LDLRP01130 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
LDLRP01130 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LDLRP01130 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LDLRP01130 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LDLRP01130 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.62■□□□□ 0.89
LDLRP01130 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.62■□□□□ 0.89
LDLRP01130 AC010542.4-201ENST00000563151 1910 ntBASIC20.62■□□□□ 0.89
LDLRP01130 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
LDLRP01130 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LDLRP01130 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
LDLRP01130 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
LDLRP01130 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.61■□□□□ 0.89
LDLRP01130 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
LDLRP01130 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.61■□□□□ 0.89
LDLRP01130 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
LDLRP01130 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
LDLRP01130 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.61■□□□□ 0.89
LDLRP01130 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LDLRP01130 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.61■□□□□ 0.89
LDLRP01130 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.61■□□□□ 0.89
LDLRP01130 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LDLRP01130 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms