Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
MSH4O15457 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
MSH4O15457 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
MSH4O15457 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC24.3■■□□□ 1.48
MSH4O15457 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC24.3■■□□□ 1.48
MSH4O15457 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
MSH4O15457 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC24.3■■□□□ 1.48
MSH4O15457 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
MSH4O15457 AL162430.1-201ENST00000480705 870 ntBASIC24.3■■□□□ 1.48
MSH4O15457 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC24.3■■□□□ 1.48
MSH4O15457 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
MSH4O15457 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC24.3■■□□□ 1.48
MSH4O15457 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
MSH4O15457 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
MSH4O15457 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
MSH4O15457 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
MSH4O15457 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
MSH4O15457 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC24.29■■□□□ 1.48
MSH4O15457 GUSBP5-202ENST00000510805 1989 ntBASIC24.29■■□□□ 1.48
MSH4O15457 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC24.29■■□□□ 1.48
MSH4O15457 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
MSH4O15457 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC24.29■■□□□ 1.48
MSH4O15457 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC24.29■■□□□ 1.48
MSH4O15457 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
MSH4O15457 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
MSH4O15457 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC24.29■■□□□ 1.48
MSH4O15457 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
MSH4O15457 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC24.29■■□□□ 1.48
MSH4O15457 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC24.29■■□□□ 1.48
MSH4O15457 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
MSH4O15457 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC24.29■■□□□ 1.48
MSH4O15457 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
MSH4O15457 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
MSH4O15457 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
MSH4O15457 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
MSH4O15457 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
MSH4O15457 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
MSH4O15457 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
MSH4O15457 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC24.28■■□□□ 1.48
MSH4O15457 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
MSH4O15457 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
MSH4O15457 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
MSH4O15457 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
MSH4O15457 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
MSH4O15457 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC24.28■■□□□ 1.48
MSH4O15457 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC24.28■■□□□ 1.48
MSH4O15457 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
MSH4O15457 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC24.27■■□□□ 1.48
MSH4O15457 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
MSH4O15457 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
MSH4O15457 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
MSH4O15457 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
MSH4O15457 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC24.27■■□□□ 1.48
MSH4O15457 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
MSH4O15457 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
MSH4O15457 AL034346.1-201ENST00000568244 1277 ntBASIC24.27■■□□□ 1.48
MSH4O15457 CPT2-209ENST00000636935 803 ntTSL 5 BASIC24.27■■□□□ 1.48
MSH4O15457 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC24.27■■□□□ 1.48
MSH4O15457 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
MSH4O15457 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
MSH4O15457 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
MSH4O15457 AC055733.4-201ENST00000638462 1354 ntBASIC24.27■■□□□ 1.48
MSH4O15457 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH4O15457 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC24.26■■□□□ 1.47
MSH4O15457 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
MSH4O15457 AC012676.1-201ENST00000574705 1949 ntBASIC24.26■■□□□ 1.47
MSH4O15457 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH4O15457 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
MSH4O15457 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC24.26■■□□□ 1.47
MSH4O15457 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC24.26■■□□□ 1.47
MSH4O15457 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
MSH4O15457 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC24.26■■□□□ 1.47
MSH4O15457 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC24.26■■□□□ 1.47
MSH4O15457 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH4O15457 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH4O15457 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC24.26■■□□□ 1.47
MSH4O15457 AC242852.2-201ENST00000615738 1807 ntBASIC24.26■■□□□ 1.47
MSH4O15457 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
MSH4O15457 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC24.26■■□□□ 1.47
MSH4O15457 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
MSH4O15457 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC24.25■■□□□ 1.47
MSH4O15457 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
MSH4O15457 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
MSH4O15457 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC24.25■■□□□ 1.47
MSH4O15457 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC24.25■■□□□ 1.47
MSH4O15457 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
MSH4O15457 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC24.25■■□□□ 1.47
MSH4O15457 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC24.25■■□□□ 1.47
MSH4O15457 KRT18P5-201ENST00000436075 1291 ntBASIC24.25■■□□□ 1.47
MSH4O15457 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
MSH4O15457 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC24.25■■□□□ 1.47
MSH4O15457 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC24.25■■□□□ 1.47
MSH4O15457 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
MSH4O15457 AC092053.2-201ENST00000640557 1818 ntBASIC24.24■■□□□ 1.47
MSH4O15457 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
MSH4O15457 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC24.24■■□□□ 1.47
MSH4O15457 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC24.24■■□□□ 1.47
MSH4O15457 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC24.24■■□□□ 1.47
MSH4O15457 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC24.24■■□□□ 1.47
MSH4O15457 KRT18P61-201ENST00000585825 1298 ntBASIC24.24■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms