Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TCRBV3S1A0A5B6 AC104564.3-201ENST00000582367 638 ntBASIC20.2■□□□□ 0.82
TCRBV3S1A0A5B6 OXCT2P1-201ENST00000447263 1535 ntBASIC20.2■□□□□ 0.82
TCRBV3S1A0A5B6 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
TCRBV3S1A0A5B6 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.2■□□□□ 0.82
TCRBV3S1A0A5B6 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
TCRBV3S1A0A5B6 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.2■□□□□ 0.82
TCRBV3S1A0A5B6 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV3S1A0A5B6 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV3S1A0A5B6 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV3S1A0A5B6 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV3S1A0A5B6 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV3S1A0A5B6 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV3S1A0A5B6 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV3S1A0A5B6 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
TCRBV3S1A0A5B6 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV3S1A0A5B6 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV3S1A0A5B6 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV3S1A0A5B6 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV3S1A0A5B6 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TCRBV3S1A0A5B6 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
TCRBV3S1A0A5B6 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.18■□□□□ 0.82
TCRBV3S1A0A5B6 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV3S1A0A5B6 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV3S1A0A5B6 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.18■□□□□ 0.82
TCRBV3S1A0A5B6 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV3S1A0A5B6 C17orf82-201ENST00000623772 1530 ntBASIC20.18■□□□□ 0.82
TCRBV3S1A0A5B6 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
TCRBV3S1A0A5B6 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
TCRBV3S1A0A5B6 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV3S1A0A5B6 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV3S1A0A5B6 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV3S1A0A5B6 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV3S1A0A5B6 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV3S1A0A5B6 AC005703.6-201ENST00000623265 1329 ntBASIC20.18■□□□□ 0.82
TCRBV3S1A0A5B6 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
TCRBV3S1A0A5B6 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.18■□□□□ 0.82
TCRBV3S1A0A5B6 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV3S1A0A5B6 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV3S1A0A5B6 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TCRBV3S1A0A5B6 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV3S1A0A5B6 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV3S1A0A5B6 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
TCRBV3S1A0A5B6 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV3S1A0A5B6 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
TCRBV3S1A0A5B6 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
TCRBV3S1A0A5B6 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV3S1A0A5B6 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV3S1A0A5B6 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.17■□□□□ 0.82
TCRBV3S1A0A5B6 AC007952.6-201ENST00000573168 2673 ntBASIC20.17■□□□□ 0.82
TCRBV3S1A0A5B6 AC003957.1-201ENST00000625108 2673 ntBASIC20.17■□□□□ 0.82
TCRBV3S1A0A5B6 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV3S1A0A5B6 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
TCRBV3S1A0A5B6 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.17■□□□□ 0.82
TCRBV3S1A0A5B6 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.17■□□□□ 0.82
TCRBV3S1A0A5B6 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.17■□□□□ 0.82
TCRBV3S1A0A5B6 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.17■□□□□ 0.82
TCRBV3S1A0A5B6 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.17■□□□□ 0.82
TCRBV3S1A0A5B6 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV3S1A0A5B6 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TCRBV3S1A0A5B6 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV3S1A0A5B6 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.16■□□□□ 0.82
TCRBV3S1A0A5B6 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.16■□□□□ 0.82
TCRBV3S1A0A5B6 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.16■□□□□ 0.82
TCRBV3S1A0A5B6 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV3S1A0A5B6 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV3S1A0A5B6 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV3S1A0A5B6 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.16■□□□□ 0.82
TCRBV3S1A0A5B6 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
TCRBV3S1A0A5B6 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.16■□□□□ 0.82
TCRBV3S1A0A5B6 PVT1_1.1-201ENST00000615125 194 ntBASIC20.16■□□□□ 0.82
TCRBV3S1A0A5B6 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV3S1A0A5B6 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.16■□□□□ 0.82
TCRBV3S1A0A5B6 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TCRBV3S1A0A5B6 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.16■□□□□ 0.82
TCRBV3S1A0A5B6 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.16■□□□□ 0.82
TCRBV3S1A0A5B6 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.15■□□□□ 0.82
TCRBV3S1A0A5B6 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TCRBV3S1A0A5B6 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
TCRBV3S1A0A5B6 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TCRBV3S1A0A5B6 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TCRBV3S1A0A5B6 DUX4L18-201ENST00000553347 1267 ntBASIC20.15■□□□□ 0.82
TCRBV3S1A0A5B6 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.15■□□□□ 0.82
TCRBV3S1A0A5B6 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
TCRBV3S1A0A5B6 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
TCRBV3S1A0A5B6 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
TCRBV3S1A0A5B6 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
TCRBV3S1A0A5B6 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.15■□□□□ 0.82
TCRBV3S1A0A5B6 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.15■□□□□ 0.82
TCRBV3S1A0A5B6 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TCRBV3S1A0A5B6 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.15■□□□□ 0.82
TCRBV3S1A0A5B6 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
TCRBV3S1A0A5B6 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TCRBV3S1A0A5B6 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TCRBV3S1A0A5B6 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TCRBV3S1A0A5B6 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
TCRBV3S1A0A5B6 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
TCRBV3S1A0A5B6 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TCRBV3S1A0A5B6 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.14■□□□□ 0.81
TCRBV3S1A0A5B6 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms