Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
EXOSC4Q9NPD3 AC244015.2-201ENST00000616358 1861 ntBASIC19.48■□□□□ 0.71
EXOSC4Q9NPD3 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 AL157384.1-201ENST00000445995 2473 ntBASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 AC022616.5-201ENST00000518796 181 ntBASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
EXOSC4Q9NPD3 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
EXOSC4Q9NPD3 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
EXOSC4Q9NPD3 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
EXOSC4Q9NPD3 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
EXOSC4Q9NPD3 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
EXOSC4Q9NPD3 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
EXOSC4Q9NPD3 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
EXOSC4Q9NPD3 AC011551.1-201ENST00000614101 683 ntBASIC19.46■□□□□ 0.71
EXOSC4Q9NPD3 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
EXOSC4Q9NPD3 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
EXOSC4Q9NPD3 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
EXOSC4Q9NPD3 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.45■□□□□ 0.7
EXOSC4Q9NPD3 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
EXOSC4Q9NPD3 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.45■□□□□ 0.7
EXOSC4Q9NPD3 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
EXOSC4Q9NPD3 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
EXOSC4Q9NPD3 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
EXOSC4Q9NPD3 TSPY13P-201ENST00000338964 914 ntBASIC19.45■□□□□ 0.7
EXOSC4Q9NPD3 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC19.45■□□□□ 0.7
EXOSC4Q9NPD3 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.45■□□□□ 0.7
EXOSC4Q9NPD3 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
EXOSC4Q9NPD3 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
EXOSC4Q9NPD3 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
EXOSC4Q9NPD3 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.45■□□□□ 0.7
EXOSC4Q9NPD3 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
EXOSC4Q9NPD3 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC19.45■□□□□ 0.7
EXOSC4Q9NPD3 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
EXOSC4Q9NPD3 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 AC074183.2-201ENST00000623112 922 ntBASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.44■□□□□ 0.7
EXOSC4Q9NPD3 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
EXOSC4Q9NPD3 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.43■□□□□ 0.7
EXOSC4Q9NPD3 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
EXOSC4Q9NPD3 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
EXOSC4Q9NPD3 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
EXOSC4Q9NPD3 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
EXOSC4Q9NPD3 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
EXOSC4Q9NPD3 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.43■□□□□ 0.7
EXOSC4Q9NPD3 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
EXOSC4Q9NPD3 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
EXOSC4Q9NPD3 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC19.43■□□□□ 0.7
EXOSC4Q9NPD3 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
EXOSC4Q9NPD3 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
EXOSC4Q9NPD3 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
EXOSC4Q9NPD3 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
EXOSC4Q9NPD3 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
EXOSC4Q9NPD3 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
EXOSC4Q9NPD3 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
EXOSC4Q9NPD3 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
EXOSC4Q9NPD3 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
EXOSC4Q9NPD3 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.42■□□□□ 0.7
EXOSC4Q9NPD3 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
EXOSC4Q9NPD3 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.42■□□□□ 0.7
EXOSC4Q9NPD3 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
EXOSC4Q9NPD3 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
EXOSC4Q9NPD3 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
EXOSC4Q9NPD3 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms