Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC18■□□□□ 0.47
SSX3Q99909 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SSX3Q99909 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC17.99■□□□□ 0.47
SSX3Q99909 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SSX3Q99909 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SSX3Q99909 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SSX3Q99909 MIR939-201ENST00000401314 82 ntBASIC17.99■□□□□ 0.47
SSX3Q99909 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC17.99■□□□□ 0.47
SSX3Q99909 AC008764.7-201ENST00000593779 1081 ntBASIC17.99■□□□□ 0.47
SSX3Q99909 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SSX3Q99909 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SSX3Q99909 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SSX3Q99909 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SSX3Q99909 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
SSX3Q99909 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC17.99■□□□□ 0.47
SSX3Q99909 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SSX3Q99909 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SSX3Q99909 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SSX3Q99909 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
SSX3Q99909 GTSE1-AS1-202ENST00000623117 1518 ntBASIC17.98■□□□□ 0.47
SSX3Q99909 AC144652.1-201ENST00000609974 1624 ntBASIC17.98■□□□□ 0.47
SSX3Q99909 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SSX3Q99909 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SSX3Q99909 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SSX3Q99909 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SSX3Q99909 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SSX3Q99909 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC17.98■□□□□ 0.47
SSX3Q99909 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SSX3Q99909 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SSX3Q99909 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC17.98■□□□□ 0.47
SSX3Q99909 AC091305.1-201ENST00000479476 895 ntBASIC17.98■□□□□ 0.47
SSX3Q99909 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
SSX3Q99909 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
SSX3Q99909 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC17.98■□□□□ 0.47
SSX3Q99909 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SSX3Q99909 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
SSX3Q99909 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
SSX3Q99909 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SSX3Q99909 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SSX3Q99909 AC137767.1-201ENST00000602918 1920 ntBASIC17.98■□□□□ 0.47
SSX3Q99909 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SSX3Q99909 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SSX3Q99909 TERT-206ENST00000508104 2486 ntTSL 5 BASIC17.97■□□□□ 0.47
SSX3Q99909 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
SSX3Q99909 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SSX3Q99909 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SSX3Q99909 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SSX3Q99909 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC17.97■□□□□ 0.47
SSX3Q99909 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SSX3Q99909 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SSX3Q99909 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SSX3Q99909 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SSX3Q99909 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC17.97■□□□□ 0.47
SSX3Q99909 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC17.97■□□□□ 0.47
SSX3Q99909 AC027682.1-201ENST00000562846 899 ntBASIC17.97■□□□□ 0.47
SSX3Q99909 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SSX3Q99909 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC17.97■□□□□ 0.47
SSX3Q99909 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SSX3Q99909 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC17.97■□□□□ 0.47
SSX3Q99909 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC17.97■□□□□ 0.47
SSX3Q99909 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC17.97■□□□□ 0.47
SSX3Q99909 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
SSX3Q99909 LINC00526-201ENST00000581067 1875 ntBASIC17.97■□□□□ 0.47
SSX3Q99909 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SSX3Q99909 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSX3Q99909 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SSX3Q99909 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC17.96■□□□□ 0.47
SSX3Q99909 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.47
SSX3Q99909 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC17.96■□□□□ 0.47
SSX3Q99909 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSX3Q99909 AL137060.1-201ENST00000618151 2648 ntBASIC17.96■□□□□ 0.47
SSX3Q99909 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSX3Q99909 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC17.96■□□□□ 0.47
SSX3Q99909 LINC01529-204ENST00000636474 1715 ntBASIC17.96■□□□□ 0.47
SSX3Q99909 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSX3Q99909 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC17.96■□□□□ 0.47
SSX3Q99909 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSX3Q99909 GUK1-205ENST00000366722 850 ntTSL 3 BASIC17.96■□□□□ 0.47
SSX3Q99909 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC17.96■□□□□ 0.47
SSX3Q99909 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC17.96■□□□□ 0.47
SSX3Q99909 MAG-206ENST00000597035 542 ntTSL 4 BASIC17.96■□□□□ 0.47
SSX3Q99909 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.47
SSX3Q99909 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SSX3Q99909 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SSX3Q99909 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC17.96■□□□□ 0.47
SSX3Q99909 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSX3Q99909 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.96■□□□□ 0.47
SSX3Q99909 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
SSX3Q99909 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
SSX3Q99909 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC17.96■□□□□ 0.46
SSX3Q99909 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
SSX3Q99909 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
SSX3Q99909 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SSX3Q99909 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
SSX3Q99909 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX3Q99909 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX3Q99909 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX3Q99909 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
SSX3Q99909 RASA4CP-201ENST00000424092 1398 ntBASIC17.95■□□□□ 0.46
SSX3Q99909 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms